Root species for PHOX2B (ENSG00000109132) (Human) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 114 species | |
Bilateria | ~580 Mya | 112 species | 380 homologs (oldest homol. - dupl. node) 199 homologs |
Coelomata | ~570 Mya | 110 species | 197 homologs |
Olfactores | ~550 Mya | 108 species | 195 homologs |
Pre-1R | ~550 Mya | 104 species | 192 homologs |
Vertebrata | ~550 Mya | 102 species | 190 homologs |
Euteleostomi | ~420 Mya | 100 species | 189 homologs (dupl. node) 178 homologs (dupl. node) 92 homologs |
Sarcopterygii | ~400 Mya | 85 species | 75 homologs |
Tetrapoda | ~359 Mya | 83 species | 73 homologs |
Amniota | ~326 Mya | 81 species | 71 homologs |
Mammalia | ~184 Mya | 71 species | 63 homologs |
Theria | ~166 Mya | 69 species | 62 homologs |
Eutheria | ~102 Mya | 63 species | 56 homologs |
Boreoeutheria | ~95 Mya | 54 species | 48 homologs |
Euarchontoglires | ~90 Mya | 33 species | 29 homologs |
Primates | ~83 Mya | 19 species | 17 homologs |
Haplorrhini | ~57 Mya | 15 species | 14 homologs |
Simiiformes | ~45 Mya | 13 species | 13 homologs |
Catarrhini | ~31 Mya | 11 species | 11 homologs |
Hominoidea | ~25 Mya | 9 species | 9 homologs |
Hominidae | ~16 Mya | 7 species | 7 homologs |
Homo/Pan/Gorilla group | ~9 Mya | 5 species | 5 homologs |
Homo/Pan group | ~5 Mya | 3 species | 3 homologs |
Human | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'