Reference Gene Name: KH2012:KH.C3.396 Ensembl
Reference Species : Cirobu
Root Species : 34_Deuterostomia (~10 million years) 		34_Deuterostomia Link Wikipedia to Cirobu Link Ensembl
×2 ÷2 Center the view on the reference gene Shift 1 gene on the left Shift 5 genes on the left Shift 1 gene on the right Shift 5 genes on the right Zoom out Show 1 less gene on each side Show 1 more gene on each side Show half the number of genes on each side Show twice more genes on each side Zoom in
Schematic scale
Genomic scale
dN/dS Ratio
Protein Similarity
CNE Track
34_Deuterostomia speciation node (click to collapse) 34_Deuterostomia (~10 My ago) Click to hide this line (30_Chordata) 30_Chordata speciation node (click to collapse) 30_Chordata (~10 My ago) - block_289 Fam002309 Click to hide this line (28) 28 speciation node (click to collapse) 28 (~10 My ago) - block_180 Fam002309 Click to hide this line (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) 16_Ascidiacea (~10 My ago) Click to hide this line (15_Phlebobranchia) 15_Phlebobranchia speciation node (click to collapse) 15_Phlebobranchia (~10 My ago) - block_620 Click to show this node (11_Ciona) 11_Ciona speciation node (click to collapse) Click to hide this line (Cirobu) Cirobu terminal node Cirobu - Chr:KhC3 Click to hide this line (14_Phallusia) 14_Phallusia speciation node (click to collapse) 14_Phallusia (~10 My ago) - block_1 Fam012839 Fam012838 Fam010846 Fam002150.C.d.a.b.c Fam002150.C.d.a.b.d.b Fam002150.C.c.b Fam012837 Fam004648.a Fam008802 Fam003925.A.c Fam001520 Fam001693.D Fam001296.B Fam003489.B.a Fam006192 Click to hide this line (Phmamm) Phmamm terminal node Phmamm - Chr:S23 Phmamm.CG.MTP2014.S23.g00929 Phmamm.CG.MTP2014.S23.g00930 Phmamm.CG.MTP2014.S23.g00931 Phmamm.CG.MTP2014.S23.g00932 Phmamm.CG.MTP2014.S23.g00935 Phmamm.CG.MTP2014.S23.g00936 Phmamm.CG.MTP2014.S23.g00937 Phmamm.CG.MTP2014.S23.g00938 Phmamm.CG.MTP2014.S23.g00939 Phmamm.CG.MTP2014.S23.g00940 Phmamm.CG.MTP2014.S23.g00941 Phmamm.CG.MTP2014.S23.g00942 Phmamm.CG.MTP2014.S23.g00943 Phmamm.CG.MTP2014.S23.g00944 Phmamm.CG.MTP2014.S23.g00945 Phmamm.CG.MTP2014.S23.g00946 Phmamm.CG.MTP2014.S23.g00947 Phmamm.CG.MTP2014.S23.g00948 Click to hide this line (Phfumi) Phfumi terminal node Phfumi - Chr:S2 Phfumi.CG.MTP2014.S2.g00033 Phfumi.CG.MTP2014.S2.g00034 Phfumi.CG.MTP2014.S2.g00035 Phfumi.CG.MTP2014.S2.g00036 Phfumi.CG.MTP2014.S2.g00037 Phfumi.CG.MTP2014.S2.g00038 Phfumi.CG.MTP2014.S2.g00039 Phfumi.CG.MTP2014.S2.g00040 Phfumi.CG.MTP2014.S2.g00041 Phfumi.CG.MTP2014.S2.g00042 Phfumi.CG.MTP2014.S2.g00043 Phfumi.CG.MTP2014.S2.g00044 Phfumi.CG.MTP2014.S2.g00045 Phfumi.CG.MTP2014.S2.g00046 Phfumi.CG.MTP2014.S2.g00049 Phfumi.CG.MTP2014.S2.g00051 Phfumi.CG.MTP2014.S2.g00052 Phfumi.CG.MTP2014.S2.g00053 Phfumi.CG.MTP2014.S2.g00054 Phfumi.CG.MTP2014.S2.g00055 Phfumi.CG.MTP2014.S2.g00056 Phfumi.CG.MTP2014.S2.g00057 Phfumi.CG.MTP2014.S2.g00058 Phfumi.CG.MTP2014.S2.g00059 Phfumi.CG.MTP2014.S2.g00060 Phfumi.CG.MTP2014.S2.g00061 Phfumi.CG.MTP2014.S2.g00062 Phfumi.CG.MTP2014.S2.g00063 Click to hide this line (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) 8_Stolidobranchia (~10 My ago) Click to show this node (7) 7 speciation node (click to collapse) Click to hide this line (6_Halocynthia) 6_Halocynthia speciation node (click to collapse) 6_Halocynthia (~10 My ago) - block_242 Fam002647.A.b Fam001898.a.b Fam001773.W.b Fam002400.E Fam001193.Q.c Fam001739.IB.b.a.d Click to hide this line (Harore) Harore terminal node Harore - Chr:S184 Harore.CG.MTP2014.S184.g07766 Harore.CG.MTP2014.S184.g01626 Harore.CG.MTP2014.S184.g02051 Harore.CG.MTP2014.S184.g03498 Harore.CG.MTP2014.S184.g05070 Harore.CG.MTP2014.S184.g01932 Harore.CG.MTP2014.S184.g04760 Harore.CG.MTP2014.S184.g10971 Harore.CG.MTP2014.S184.g04730 Harore.CG.MTP2014.S184.g07339 Harore.CG.MTP2014.S184.g08455 Harore.CG.MTP2014.S184.g12067 Harore.CG.MTP2014.S184.g14659 Harore.CG.MTP2014.S184.g00167 Harore.CG.MTP2014.S184.g03488 Harore.CG.MTP2014.S184.g00076 Harore.CG.MTP2014.S184.g07705 Harore.CG.MTP2014.S184.g14486 Harore.CG.MTP2014.S184.g03124 Harore.CG.MTP2014.S184.g04716 Harore.CG.MTP2014.S184.g08045 Harore.CG.MTP2014.S184.g13461 Harore.CG.MTP2014.S184.g00064 Harore.CG.MTP2014.S184.g09116 Harore.CG.MTP2014.S184.g10629 Harore.CG.MTP2014.S184.g13571 Harore.CG.MTP2014.S184.g00656 Click to hide this line (Haaura) Haaura terminal node Haaura - Chr:S169 Haaura.CG.MTP2014.S169.g02912 Haaura.CG.MTP2014.S169.g02913 Haaura.CG.MTP2014.S169.g02914 Haaura.CG.MTP2014.S169.g02915 Haaura.CG.MTP2014.S169.g02916 Haaura.CG.MTP2014.S169.g02917 Haaura.CG.MTP2014.S169.g02918 Haaura.CG.MTP2014.S169.g02919 Haaura.CG.MTP2014.S169.g02920 Haaura.CG.MTP2014.S169.g02921 Haaura.CG.MTP2014.S169.g02922 Haaura.CG.MTP2014.S169.g02923 Haaura.CG.MTP2014.S169.g02925 Haaura.CG.MTP2014.S169.g02926 Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to hide this line (Moocul) Moocul terminal node Moocul - Chr:S114882 Moocul.CG.ELv1_2.S114882.g13737 Moocul.CG.ELv1_2.S114882.g13738 Moocul.CG.ELv1_2.S114882.g13740 Moocul.CG.ELv1_2.S114882.g13741 Click to show this node (26_Sarcopterygii) 26_Sarcopterygii duplication node (click to collapse) Click to hide this line (26_Sarcopterygii) 26_Sarcopterygii speciation node (click to collapse) 26_Sarcopterygii (~10 My ago) - block_158 Fam004064.A Fam002309 Fam002091.B.a Fam001865.C.a.c Fam001865.A Click to hide this line (Lcha) Lcha terminal node Lcha - Chr:JH127183.1 ENSLACG00000007951 ENSLACG00000008826 ENSLACG00000011682 ENSLACG00000011762 ENSLACG00000012570 ENSLACG00000013266 ENSLACG00000013467 ENSLACG00000014405 Click to hide this line (25_Amniota) 25_Amniota speciation node (click to collapse) 25_Amniota (~10 My ago) - block_51 Fam003155.B.b Fam005484.b.a.b Fam002770.A.b Fam005792 Fam010990 Fam001746.F.a Fam001759.B.a Fam006771.a.b Fam002532.B.a.b Fam001910.B Fam002611.C.b Fam001865.A.a Fam001865.C.a.c.a Fam002091.B.a Fam002309 Fam004064.A Click to hide this line (24_Euarchontoglires) 24_Euarchontoglires speciation node (click to collapse) 24_Euarchontoglires (~10 My ago) - block_65 Fam005792 Fam010990 Fam001746.F.a Fam001759.B.a Fam004756.b.b Fam006771.a.b Fam002532.B.a.b Fam001910.B Fam002611.C.b Fam003453.A.a.a.b.b Fam001865.G.b.a.b Fam001865.A.b Fam001865.C.a.c.b Fam002091.B.a Fam002309 Fam001684.D.b Fam008447.a Fam001966.H.b.b Fam005450.c.b Fam002072.A.c.a Fam004557.a Fam006011.b.a Fam007468.b.b Fam006779 Fam003815.a Fam003744.b.b.a.a.b Click to hide this line (Mmus) Mmus terminal node Mmus - Chr:9 ENSMUSG00000062296 ENSMUSG00000032500 ENSMUSG00000032502 ENSMUSG00000032503 ENSMUSG00000032504 ENSMUSG00000033392 ENSMUSG00000009741 ENSMUSG00000032507 ENSMUSG00000086596 ENSMUSG00000064299 ENSMUSG00000053820 ENSMUSG00000032431 ENSMUSG00000045594 ENSMUSG00000079260 ENSMUSG00000047898 ENSMUSG00000097821 ENSMUSG00000056167 ENSMUSG00000032435 ENSMUSG00000032434 ENSMUSG00000032436 ENSMUSG00000041012 ENSMUSG00000050627 ENSMUSG00000050621 ENSMUSG00000040875 ENSMUSG00000032437 ENSMUSG00000056880 ENSMUSG00000032440 ENSMUSG00000039607 ENSMUSG00000039285 ENSMUSG00000039163 Click to hide this line (Hsap) Hsap terminal node Hsap - Chr:3 ENSG00000187118 ENSG00000163512 ENSG00000206559 ENSG00000144642 ENSG00000163513 ENSG00000144644 ENSG00000163527 ENSG00000144645 ENSG00000197385 ENSG00000152642 ENSG00000170293 ENSG00000153551 ENSG00000091317 ENSG00000144635 ENSG00000182973 ENSG00000183813 ENSG00000170266 ENSG00000188167 ENSG00000170275 ENSG00000173705 ENSG00000153558 ENSG00000153560 ENSG00000163539 ENSG00000170248 ENSG00000172995 ENSG00000144681 ENSG00000163673 ENSG00000168016 ENSG00000178567 ENSG00000076242 Click to hide this line (21_Archelosauria) 21_Archelosauria speciation node (click to collapse) 21_Archelosauria (~10 My ago) - block_48 Fam005484.b.a.b Fam002770.A.b Fam005792 Fam010990 Fam001746.F.a Fam001759.B.a Fam004756.b.a Fam006771.a.b Fam002532.B.a.b Fam001910.B Fam002611.C.b Fam001865.A.a Fam001865.C.a.c.a Fam002091.B.a Fam002309 Fam004064.A Click to hide this line (Ggal) Ggal terminal node Ggal - Chr:2 ENSGALG00000011405 ENSGALG00000027247 ENSGALG00000025811 ENSGALG00000011428 ENSGALG00000011439 ENSGALG00000011442 ENSGALG00000011447 ENSGALG00000011465 ENSGALG00000011474 ENSGALG00000011481 ENSGALG00000011484 ENSGALG00000011488 ENSGALG00000011490 ENSGALG00000011491 ENSGALG00000011494 ENSGALG00000011498 ENSGALG00000028090 ENSGALG00000011510 ENSGALG00000011513 ENSGALG00000011517 ENSGALG00000011518 ENSGALG00000011521 ENSGALG00000011523 ENSGALG00000011527 ENSGALG00000011530 ENSGALG00000011535 ENSGALG00000027855 ENSGALG00000027076 ENSGALG00000011539 ENSGALG00000011542 Click to hide this line (Psin) Psin terminal node Psin - Chr:JH212176.1 ENSPSIG00000000824 ENSPSIG00000004381 ENSPSIG00000004388 ENSPSIG00000004431 ENSPSIG00000004471 ENSPSIG00000004499 ENSPSIG00000004588 ENSPSIG00000004686 ENSPSIG00000004739 ENSPSIG00000004749 ENSPSIG00000004806 ENSPSIG00000004957 ENSPSIG00000005104 ENSPSIG00000005134 ENSPSIG00000005251 ENSPSIG00000005269 ENSPSIG00000005336 ENSPSIG00000005347 ENSPSIG00000000831 ENSPSIG00000005360 Click to show this node (26_Sarcopterygii) 26_Sarcopterygii speciation node (click to collapse) Click to show this node (Lcha) Lcha duplication node (click to collapse) Click to hide this line (Lcha) Lcha terminal node Lcha - Chr:JH127235.1 ENSLACG00000005953 ENSLACG00000007440 ENSLACG00000010977 ENSLACG00000012363 ENSLACG00000013406 Click to hide this line (Bbel) Bbel terminal node Bbel - scaffold59 236330F 236340F 236350F 236360R 236370F 236380F 236390F 236400R 236410R 236420R 236430F 236440F 236450F 236460F 236470F 236490R 236500F 236510F 236520F 236530F 236540R 236550R 236560R 236570F 236580R 236590R 236600F 236610R 236620F 236630R Click to hide this line (33) 33 speciation node (click to collapse) 33 (~10 My ago) Click to hide this line (Skow) Skow terminal node Skow - scaffold_278 Sakowv30022430m.g Sakowv30022426m.g Sakowv30022443m.g Sakowv30022428m.g Sakowv30022429m.g Sakowv30022427m.g Sakowv30022437m.g Sakowv30022453m.g Sakowv30022424m.g Sakowv30022425m.g Sakowv30022445m.g Sakowv30022448m.g Sakowv30022432m.g Sakowv30022442m.g Sakowv30022433m.g Sakowv30022440m.g Sakowv30022436m.g Click to hide this line (Spur) Spur terminal node Spur - Chr:Scaffold219 SPU_012929 SPU_024625 SPU_021927 SPU_021926 SPU_021925 SPU_001725 SPU_001711 SPU_001724 SPU_001723 SPU_001712 SPU_001713 SPU_001722 SPU_001714 SPU_001715 SPU_001716 SPU_001720 SPU_001717 SPU_001719 SPU_001718 SPU_013692 SPU_004310 SPU_015359 SPU_007828 SPU_007829 SPU_015360 SPU_015358 SPU_011752 KH2012:KH.C3.212 KH2012:KH.C3.511 KH2012:KH.C3.455 KH2012:KH.C3.735 KH2012:KH.C3.859 KH2012:KH.C3.646 Haaura.CG.MTP2014.S169.g02924 Fam001915.E.b KH2012:KH.C3.709 Fam001915.E.b Phmamm.CG.MTP2014.S23.g00934 Phfumi.CG.MTP2014.S2.g00047 KH2012:KH.C3.598 Fam006417 Fam006417 Fam006417 Fam006417 Fam006417 KH2012:KH.C3.396 Fam006417 Phmamm.CG.MTP2014.S23.g00933 Phfumi.CG.MTP2014.S2.g00048 Fam006417 Fam006417 Harore.CG.MTP2014.S184.g13817 Haaura.CG.MTP2014.S169.g02911 Moocul.CG.ELv1_2.S114882.g13739 Fam006417.a ENSLACG00000010185 Fam006417.a Fam006417.a ENSMUSG00000079259 ENSG00000206557 Fam006417.a ENSGALG00000019622 ENSPSIG00000004480 ENSLACG00000014135 236480R Fam006417 Sakowv30022423m.g SPU_001721 KH2012:KH.C3.112 KH2012:KH.C3.818 KH2012:KH.C3.458 KH2012:KH.C3.614 KH2012:KH.C3.483 KH2012:KH.C3.31 KH2012:KH.C3.326 KH2012:KH.C3.340 KH2012:KH.C3.752 KH2012:KH.C3.909 KH2012:KH.C3.934 KH2012:KH.C3.695 KH2012:KH.C3.904 KH2012:KH.C3.339 Phfumi.CG.MTP2014.S2.g00050 KH2012:KH.C3.794 KH2012:KH.C3.864 KH2012:KH.C3.912 KH2012:KH.C3.516 KH2012:KH.C3.667 KH2012:KH.C3.409 KH2012:KH.C3.239 KH2012:KH.C3.851