Reference Gene Name: KH2012:KH.C10.517 Ensembl
Reference Species : Cirobu
Root Species : 34_Deuterostomia (~10 million years) 		34_Deuterostomia Link Wikipedia to Cirobu Link Ensembl
×2 ÷2 Center the view on the reference gene Shift 1 gene on the left Shift 5 genes on the left Shift 1 gene on the right Shift 5 genes on the right Zoom out Show 1 less gene on each side Show 1 more gene on each side Show half the number of genes on each side Show twice more genes on each side Zoom in
Schematic scale
Genomic scale
dN/dS Ratio
Protein Similarity
CNE Track
34_Deuterostomia duplication node (click to collapse) 34_Deuterostomia (~10 My ago) Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to hide this line (28) 28 speciation node (click to collapse) 28 (~10 My ago) Click to hide this line (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) 16_Ascidiacea (~10 My ago) Click to hide this line (15_Phlebobranchia) 15_Phlebobranchia speciation node (click to collapse) 15_Phlebobranchia (~10 My ago) - block_82 Click to hide this line (11_Ciona) 11_Ciona speciation node (click to collapse) 11_Ciona (~10 My ago) - block_268 Click to hide this line (Cirobu) Cirobu terminal node Cirobu - Chr:KhC10 Click to hide this line (Cisavi) Cisavi terminal node Cisavi - Chr:reftig_72 Cisavi.CG.ENS81.R72.1733589-1734326 (ENSCSAVG00000006138) Cisavi.CG.ENS81.R72.1733606-1740155 (ENSCSAVG00000006141) Cisavi.CG.ENS81.R72.1763301-1774078 (ENSCSAVG00000006223) Cisavi.CG.ENS81.R72.1817785-1820295 (ENSCSAVG00000006389) Cisavi.CG.ENS81.R72.1892677-1919776 (ENSCSAVG00000006391) Cisavi.CG.ENS81.R72.1927987-1938916 (ENSCSAVG00000006481) Cisavi.CG.ENS81.R72.1965153-1970420 (ENSCSAVG00000006482) Cisavi.CG.ENS81.R72.1976268-1983393 (ENSCSAVG00000006484) Cisavi.CG.ENS81.R72.1984427-1992595 (ENSCSAVG00000006485) Cisavi.CG.ENS81.R72.2023631-2031232 (ENSCSAVG00000006490) Cisavi.CG.ENS81.R72.2064926-2073374 (ENSCSAVG00000006492) Cisavi.CG.ENS81.R72.2082526-2088626 (ENSCSAVG00000006563) Cisavi.CG.ENS81.R72.2163415-2164143 (ENSCSAVG00000006566) Cisavi.CG.ENS81.R72.2328100-2329068 (ENSCSAVG00000006569) Cisavi.CG.ENS81.R72.2345320-2345992 (ENSCSAVG00000006681) Cisavi.CG.ENS81.R72.2391407-2395475 (ENSCSAVG00000006686) Cisavi.CG.ENS81.R72.2412536-2424089 (ENSCSAVG00000006689) Cisavi.CG.ENS81.R72.2425977-2429426 (ENSCSAVG00000006766) Cisavi.CG.ENS81.R72.2430939-2431916 (ENSCSAVG00000006834) Cisavi.CG.ENS81.R72.2437760-2449640 (ENSCSAVG00000006837) Cisavi.CG.ENS81.R72.2456283-2460462 (ENSCSAVG00000006875) Cisavi.CG.ENS81.R72.2488641-2514129 (ENSCSAVG00000006878) Cisavi.CG.ENS81.R72.2522918-2525944 (ENSCSAVG00000006886) Click to show this node (14_Phallusia) 14_Phallusia speciation node (click to collapse) Click to hide this line (Phmamm) Phmamm terminal node Phmamm - Chr:S66 Phmamm.CG.MTP2014.S66.g02352 Phmamm.CG.MTP2014.S66.g02353 Phmamm.CG.MTP2014.S66.g02354 Phmamm.CG.MTP2014.S66.g02355 Phmamm.CG.MTP2014.S66.g02356 Phmamm.CG.MTP2014.S66.g02357 Phmamm.CG.MTP2014.S66.g02358 Phmamm.CG.MTP2014.S66.g02359 Phmamm.CG.MTP2014.S66.g02360 Phmamm.CG.MTP2014.S66.g02368 Phmamm.CG.MTP2014.S66.g02369 Phmamm.CG.MTP2014.S66.g02371 Phmamm.CG.MTP2014.S66.g02372 Phmamm.CG.MTP2014.S66.g02373 Click to hide this line (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) 8_Stolidobranchia (~10 My ago) - block_479 Fam006311.a Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S327016 Moocci.CG.ELv1_2.S327016.g08613 Moocci.CG.ELv1_2.S327016.g08614 Moocci.CG.ELv1_2.S327016.g08615 Moocci.CG.ELv1_2.S327016.g08618 Moocci.CG.ELv1_2.S327016.g08619 Moocci.CG.ELv1_2.S327016.g08620 Click to show this node (7) 7 speciation node (click to collapse) Click to hide this line (6_Halocynthia) 6_Halocynthia speciation node (click to collapse) 6_Halocynthia (~10 My ago) - block_153 Fam001978.K.a.c Fam009458 Fam006311.a.c Fam006311.a.d Fam002643.D.a Fam004939.A Fam002525.A.b.a Click to hide this line (Haaura) Haaura terminal node Haaura - Chr:S364 Haaura.CG.MTP2014.S364.g04583 Haaura.CG.MTP2014.S364.g04584 Haaura.CG.MTP2014.S364.g04585 Haaura.CG.MTP2014.S364.g04587 Haaura.CG.MTP2014.S364.g04588 Haaura.CG.MTP2014.S364.g04589 Haaura.CG.MTP2014.S364.g04590 Haaura.CG.MTP2014.S364.g04591 Haaura.CG.MTP2014.S364.g04592 Haaura.CG.MTP2014.S364.g04593 Click to hide this line (Harore) Harore terminal node Harore - Chr:S277 Harore.CG.MTP2014.S277.g02235 Harore.CG.MTP2014.S277.g00438 Harore.CG.MTP2014.S277.g01196 Harore.CG.MTP2014.S277.g14331 Harore.CG.MTP2014.S277.g00574 Harore.CG.MTP2014.S277.g15942 Harore.CG.MTP2014.S277.g03167 Harore.CG.MTP2014.S277.g04267 Harore.CG.MTP2014.S277.g13005 Harore.CG.MTP2014.S277.g14270 Harore.CG.MTP2014.S277.g13162 Harore.CG.MTP2014.S277.g08493 Harore.CG.MTP2014.S277.g01204 Harore.CG.MTP2014.S277.g12786 Harore.CG.MTP2014.S277.g09840 Harore.CG.MTP2014.S277.g02876 Harore.CG.MTP2014.S277.g15728 Harore.CG.MTP2014.S277.g11234 Harore.CG.MTP2014.S277.g12769 Click to show this node (26_Sarcopterygii) 26_Sarcopterygii duplication node (click to collapse) Click to show this node (26_Sarcopterygii) 26_Sarcopterygii speciation node (click to collapse) Click to show this node (Lcha) Lcha duplication node (click to collapse) Click to hide this line (Lcha) Lcha terminal node Lcha - Chr:JH127934.1 ENSLACG00000022145 ENSLACG00000003805 ENSLACG00000008112 ENSLACG00000010608 Click to show this node (26_Sarcopterygii) 26_Sarcopterygii speciation node (click to collapse) Click to hide this line (25_Amniota) 25_Amniota speciation node (click to collapse) 25_Amniota (~10 My ago) - block_3 Fam006187.b.b Fam003831.c.a Fam006181.a.b Fam002811.D Fam001775.a.b Fam001686.M Fam002399.D.a.a Fam001985.K Fam007598.a.b Fam006120.a.b.a.c.a Fam002824.C.a Fam003685.b Fam002357.F.b Fam003014.A.a Fam010669.a Fam002635.A.b.a.b Fam003577 Fam007134.b.b.a.b Fam006183.d.a Fam010068.a Fam002565.b.a.b Fam001786.B.a Fam001642.b Fam001861.FB.a.a Fam004453 Fam007475.a.b Fam001691.M.d.a.a.b Fam004963.a Fam002330.F.b.b Fam003159.A Click to hide this line (21_Archelosauria) 21_Archelosauria speciation node (click to collapse) 21_Archelosauria (~10 My ago) - block_1 Fam006187.b.b Fam003831.c.a Fam006181.a.b Fam002811.D Fam001775.a.b Fam001686.M Fam002399.D.a.a Fam001985.K Fam007598.a.b Fam006120.a.b.a.c.a Fam002824.C.a Fam003685.b Fam002357.F.b Fam003014.A.a Fam010669.a Fam002635.A.b.a.b Fam003577 Fam007134.b.b.a.b Fam006183.d.a Fam010068.a Fam002565.b.a.b Fam001786.B.a Fam001642.b Fam001861.FB.a.a Fam004453 Fam007475.a.b Fam001691.M.d.a.a.b Fam004963.a Fam002330.F.b.b Fam003159.A Click to hide this line (Ggal) Ggal terminal node Ggal - Chr:1 ENSGALG00000016949 ENSGALG00000016951 ENSGALG00000016953 ENSGALG00000016954 ENSGALG00000016955 ENSGALG00000016959 ENSGALG00000022739 ENSGALG00000026163 ENSGALG00000016962 ENSGALG00000016964 ENSGALG00000016965 ENSGALG00000016967 ENSGALG00000016968 ENSGALG00000016969 ENSGALG00000016971 ENSGALG00000016973 ENSGALG00000016974 ENSGALG00000016975 ENSGALG00000028872 ENSGALG00000016979 ENSGALG00000016980 ENSGALG00000022738 ENSGALG00000016981 ENSGALG00000026849 ENSGALG00000016984 ENSGALG00000016985 ENSGALG00000016986 ENSGALG00000028246 ENSGALG00000016987 ENSGALG00000027689 Click to hide this line (Psin) Psin terminal node Psin - Chr:JH209117.1 ENSPSIG00000004773 ENSPSIG00000005139 ENSPSIG00000005988 ENSPSIG00000006588 ENSPSIG00000006696 ENSPSIG00000006777 ENSPSIG00000007115 ENSPSIG00000007124 ENSPSIG00000001077 ENSPSIG00000007131 ENSPSIG00000007152 ENSPSIG00000007381 ENSPSIG00000007488 ENSPSIG00000007493 ENSPSIG00000001094 ENSPSIG00000007503 ENSPSIG00000001109 Click to hide this line (24_Euarchontoglires) 24_Euarchontoglires speciation node (click to collapse) 24_Euarchontoglires (~10 My ago) - block_17 Fam006187.a.b Fam002811.D Fam001775.a.b Fam001686.M Fam002399.D.a.a Fam002963.B.a Fam001985.K Fam007598.a.b Fam006120.a.b.a.c.a Fam002824.C.a Fam003685.b Fam002357.F.b Fam003014.A.a Fam010669.a Fam005578 Fam002635.A.b.a.b Fam003577 Fam007134.b.b.a.b Fam006183.d.a Fam010068.a Fam002565.b.a.b Fam001786.B.a Fam001642.b Fam001861.FB.a.a Fam004453 Fam007475.a.b Fam001691.M.d.a.a.b Fam004963.a Fam002330.F.b.b Fam002754.A.b.a.a Click to hide this line (Mmus) Mmus terminal node Mmus - Chr:14 ENSMUSG00000068015 ENSMUSG00000034959 ENSMUSG00000021997 ENSMUSG00000021998 ENSMUSG00000021999 ENSMUSG00000022000 ENSMUSG00000091722 ENSMUSG00000034913 ENSMUSG00000022002 ENSMUSG00000034893 ENSMUSG00000022003 ENSMUSG00000060126 ENSMUSG00000067995 ENSMUSG00000046523 ENSMUSG00000022008 ENSMUSG00000095427 ENSMUSG00000022010 ENSMUSG00000052584 ENSMUSG00000044350 ENSMUSG00000034795 ENSMUSG00000022012 ENSMUSG00000075512 ENSMUSG00000022013 ENSMUSG00000022014 ENSMUSG00000045655 ENSMUSG00000022015 ENSMUSG00000022016 ENSMUSG00000034731 ENSMUSG00000058997 ENSMUSG00000071262 Click to hide this line (Hsap) Hsap terminal node Hsap - Chr:13 ENSG00000172766 ENSG00000102760 ENSG00000102763 ENSG00000102780 ENSG00000023516 ENSG00000120659 ENSG00000179813 ENSG00000133106 ENSG00000120675 ENSG00000120658 ENSG00000151773 ENSG00000179630 ENSG00000139656 ENSG00000151778 ENSG00000102804 ENSG00000133114 ENSG00000188342 ENSG00000180332 ENSG00000133112 ENSG00000174032 ENSG00000136152 ENSG00000165837 ENSG00000174015 ENSG00000215475 ENSG00000123200 ENSG00000080618 ENSG00000136167 ENSG00000173988 ENSG00000102445 ENSG00000136141 Click to hide this line (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) 34_Deuterostomia (~10 My ago) Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to hide this line (Bbel) Bbel terminal node Bbel - scaffold41 193810R 193820R 193830F 193840F 193850F 193860R 193870F 193880F 193890R 193900F 193910R 193920F 193930R 193940R 193950F 193970F 193980R 193990F 194000F 194010R 194020F 194030R 194040R 194050F 194060R 194070F 194080R 194090F 194100F 194110R Click to hide this line (33) 33 speciation node (click to collapse) 33 (~10 My ago) Click to hide this line (Skow) Skow terminal node Skow - scaffold_1002 Sakowv30017611m.g Sakowv30017613m.g Sakowv30017607m.g Sakowv30017605m.g Click to hide this line (Spur) Spur terminal node Spur - Chr:Scaffold1956 SPU_027913 Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to show this node (28) 28 speciation node (click to collapse) Click to show this node (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S300533 Moocci.CG.ELv1_2.S300533.g07594 Moocci.CG.ELv1_2.S300533.g07595 Moocci.CG.ELv1_2.S300533.g07596 Moocci.CG.ELv1_2.S300533.g07597 Moocci.CG.ELv1_2.S300533.g07598 Moocci.CG.ELv1_2.S300533.g07599 Moocci.CG.ELv1_2.S300533.g07600 Moocci.CG.ELv1_2.S300533.g07602 Moocci.CG.ELv1_2.S300533.g07603 Moocci.CG.ELv1_2.S300533.g07604 Moocci.CG.ELv1_2.S300533.g07605 Moocci.CG.ELv1_2.S300533.g07606 Moocci.CG.ELv1_2.S300533.g07607 Moocci.CG.ELv1_2.S300533.g07608 Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to show this node (28) 28 speciation node (click to collapse) Click to show this node (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to show this node (7) 7 speciation node (click to collapse) Click to hide this line (Boschl) Boschl terminal node Boschl - Chr:chrUn Boschl.CG.Botznik2013.chrUn.g03994 Boschl.CG.Botznik2013.chrUn.g03995 Boschl.CG.Botznik2013.chrUn.g03997 Boschl.CG.Botznik2013.chrUn.g03998 Boschl.CG.Botznik2013.chrUn.g04001 Boschl.CG.Botznik2013.chrUn.g04002 Boschl.CG.Botznik2013.chrUn.g04003 Boschl.CG.Botznik2013.chrUn.g04005 Boschl.CG.Botznik2013.chrUn.g04006 Boschl.CG.Botznik2013.chrUn.g04008 Boschl.CG.Botznik2013.chrUn.g04010 Boschl.CG.Botznik2013.chrUn.g04011 Boschl.CG.Botznik2013.chrUn.g04012 Boschl.CG.Botznik2013.chrUn.g04013 Boschl.CG.Botznik2013.chrUn.g04014 Boschl.CG.Botznik2013.chrUn.g04017 Boschl.CG.Botznik2013.chrUn.g04018 Boschl.CG.Botznik2013.chrUn.g04021 Boschl.CG.Botznik2013.chrUn.g04022 Boschl.CG.Botznik2013.chrUn.g04023 Boschl.CG.Botznik2013.chrUn.g04024 Boschl.CG.Botznik2013.chrUn.g04029 Boschl.CG.Botznik2013.chrUn.g04032 Boschl.CG.Botznik2013.chrUn.g04033 Boschl.CG.Botznik2013.chrUn.g04040 Boschl.CG.Botznik2013.chrUn.g04041 Boschl.CG.Botznik2013.chrUn.g04042 Boschl.CG.Botznik2013.chrUn.g04043 Boschl.CG.Botznik2013.chrUn.g04044 Boschl.CG.Botznik2013.chrUn.g04047 Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to show this node (28) 28 speciation node (click to collapse) Click to show this node (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to show this node (7) 7 speciation node (click to collapse) Click to hide this line (6_Halocynthia) 6_Halocynthia speciation node (click to collapse) 6_Halocynthia (~10 My ago) - block_196 Fam011388 Fam008328.b Fam003049.B.b.a Fam003006.F.b.a Fam003049.B.b.b.b Fam009488 Click to hide this line (Haaura) Haaura terminal node Haaura - Chr:S546 Haaura.CG.MTP2014.S546.g05662 Haaura.CG.MTP2014.S546.g05663 Haaura.CG.MTP2014.S546.g05664 Haaura.CG.MTP2014.S546.g05665 Haaura.CG.MTP2014.S546.g05666 Haaura.CG.MTP2014.S546.g05667 Haaura.CG.MTP2014.S546.g05669 Haaura.CG.MTP2014.S546.g05670 Click to hide this line (Harore) Harore terminal node Harore - Chr:S191 Harore.CG.MTP2014.S191.g02351 Harore.CG.MTP2014.S191.g01616 Harore.CG.MTP2014.S191.g01721 Harore.CG.MTP2014.S191.g00411 Harore.CG.MTP2014.S191.g07969 Harore.CG.MTP2014.S191.g05339 Harore.CG.MTP2014.S191.g06475 Harore.CG.MTP2014.S191.g01930 Harore.CG.MTP2014.S191.g10559 Harore.CG.MTP2014.S191.g12606 Harore.CG.MTP2014.S191.g14349 Harore.CG.MTP2014.S191.g13566 Harore.CG.MTP2014.S191.g04179 Harore.CG.MTP2014.S191.g08937 Harore.CG.MTP2014.S191.g03966 Harore.CG.MTP2014.S191.g00581 Harore.CG.MTP2014.S191.g10058 Harore.CG.MTP2014.S191.g00124 Harore.CG.MTP2014.S191.g13834 Harore.CG.MTP2014.S191.g14073 Harore.CG.MTP2014.S191.g16059 Harore.CG.MTP2014.S191.g08384 Harore.CG.MTP2014.S191.g04272 Harore.CG.MTP2014.S191.g10199 Harore.CG.MTP2014.S191.g00938 Harore.CG.MTP2014.S191.g12938 Harore.CG.MTP2014.S191.g08071 Harore.CG.MTP2014.S191.g13152 Harore.CG.MTP2014.S191.g02737 Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to hide this line (Bbel) Bbel terminal node Bbel - scaffold9 292480F 292490R 292500F 292510F 292520R 292530F 292540R 292550F 292560R 292570F 292580R 292590F 292600R 292610R 292620F 292640R 292650F 292660R 292670R 292680F 292690F 292700R 292710F 292720R 292730F 292740R 292750F 292760F 292770R 292780R Click to hide this line (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) 34_Deuterostomia (~10 My ago) Click to hide this line (33) 33 speciation node (click to collapse) 33 (~10 My ago) Click to hide this line (Spur) Spur terminal node Spur - Chr:Scaffold19 SPU_020933 SPU_003726 SPU_011790 SPU_000625 SPU_007564 SPU_007563 SPU_007562 SPU_007059 SPU_007054 SPU_007058 SPU_017607 SPU_007055 SPU_007057 SPU_007056 SPU_019103 SPU_019102 SPU_010294 SPU_010295 SPU_010293 SPU_027022 SPU_027020 SPU_027021 SPU_005569 SPU_005568 SPU_007458 SPU_007459 SPU_007460 SPU_007457 SPU_007461 SPU_007462 Click to hide this line (Skow) Skow terminal node Skow - scaffold_342 Sakowv30010527m.g Sakowv30010516m.g Sakowv30010521m.g Sakowv30010518m.g Sakowv30010535m.g Sakowv30010517m.g Sakowv30010514m.g Sakowv30010506m.g Sakowv30010511m.g Sakowv30010522m.g Sakowv30010525m.g Sakowv30010512m.g Sakowv30010538m.g Sakowv30010520m.g Sakowv30010510m.g Sakowv30010537m.g Sakowv30010536m.g Sakowv30010533m.g Sakowv30010532m.g Sakowv30010519m.g Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to show this node (28) 28 speciation node (click to collapse) Click to hide this line (26_Sarcopterygii) 26_Sarcopterygii speciation node (click to collapse) 26_Sarcopterygii (~10 My ago) - block_1054 Fam002604.H.a.a Click to hide this line (25_Amniota) 25_Amniota speciation node (click to collapse) 25_Amniota (~10 My ago) - block_1 Fam002430.B Fam012368.a.a.b Fam002911.D.a.a Fam002876.B.b.b Fam005321.c.a.a Fam005262 Fam002648.H.a Fam002002.Y.b.a Fam005275.a.b Fam001990.E.b.b Fam003054.A.a.a Fam004899.b.a Fam007447 Fam005265 Fam008135.a.b Fam002604.H.a.a Fam002604.H.a.b.a Fam001743.E.b.a.b Fam005808.b Fam006697.a Fam002002.I.a.a.b Fam002882.B.a Fam002270.A.a.a Fam001807.E Fam002237.G.a.b.b Fam003013.B.a.b Fam004900.A.a Fam001947.E.a.b Fam003972.a Fam002444.E Click to hide this line (21_Archelosauria) 21_Archelosauria speciation node (click to collapse) 21_Archelosauria (~10 My ago) - block_19 Fam012368.a.a.b Fam002911.D.a.a Fam002876.B.b.b Fam005321.c.a.a Fam005262 Fam002648.H.a Fam002002.Y.b.a Fam005275.a.b Fam001990.E.b.b Fam003054.A.a.a Fam004899.b.a Fam007447 Fam005265 Fam008135.a.b Fam006730.a.b.a Fam002604.H.a.a Fam002604.H.a.b.a Fam001743.E.b.a.b Fam005808.b Fam006697.a Fam002002.I.a.a.b Fam002882.B.a Fam002270.A.a.a Fam001807.E Fam002237.G.a.b.b Fam003013.B.a.b Fam004900.A.a Fam001947.E.a.b Fam003972.a.b Click to hide this line (Ggal) Ggal terminal node Ggal - Chr:1 ENSGALG00000011932 ENSGALG00000011934 ENSGALG00000011944 ENSGALG00000000049 ENSGALG00000011947 ENSGALG00000011950 ENSGALG00000011953 ENSGALG00000011957 ENSGALG00000011958 ENSGALG00000011965 ENSGALG00000011966 ENSGALG00000011970 ENSGALG00000011976 ENSGALG00000011992 ENSGALG00000011993 ENSGALG00000012007 ENSGALG00000012013 ENSGALG00000012024 ENSGALG00000012033 ENSGALG00000012034 ENSGALG00000012050 ENSGALG00000012053 ENSGALG00000012056 ENSGALG00000012122 ENSGALG00000012132 ENSGALG00000012135 ENSGALG00000012144 ENSGALG00000028989 ENSGALG00000012146 ENSGALG00000012150 Click to hide this line (Psin) Psin terminal node Psin - Chr:JH209111.1 ENSPSIG00000004436 ENSPSIG00000004513 ENSPSIG00000001693 ENSPSIG00000005318 ENSPSIG00000005445 ENSPSIG00000006114 ENSPSIG00000007042 ENSPSIG00000004546 ENSPSIG00000004553 ENSPSIG00000004730 ENSPSIG00000004772 ENSPSIG00000005049 ENSPSIG00000005321 ENSPSIG00000005447 ENSPSIG00000005458 ENSPSIG00000005743 ENSPSIG00000006835 ENSPSIG00000007002 ENSPSIG00000007014 ENSPSIG00000007077 ENSPSIG00000008284 ENSPSIG00000008362 ENSPSIG00000008638 ENSPSIG00000008686 Click to hide this line (24_Euarchontoglires) 24_Euarchontoglires speciation node (click to collapse) 24_Euarchontoglires (~10 My ago) - block_40 Fam002911.D.a.a Fam002876.B.b.b Fam005321.c.a.a Fam005262 Fam002648.H.a Fam002002.Y.b.a Fam005275.a.b Fam001990.E.b.b Fam003054.A.a.a Fam004899.b.a Fam007447 Fam005265 Fam008135.a.b Fam003034.E.c.b.a Fam006730.a.b.b Fam002585.D.a.a.b.b.b Fam002604.H.a.b.a Fam001743.E.b.a.b Fam005808.b Fam006697.a Fam002002.I.a.a.b Fam002882.B.a Fam002270.A.a.a Fam001807.E Fam002237.G.a.b.a Fam003013.B.a.b Fam004900.A.a Fam001947.E.a.a Fam003972.a Fam002444.E Click to hide this line (Mmus) Mmus terminal node Mmus - Chr:15 ENSMUSG00000022412 ENSMUSG00000042406 ENSMUSG00000051518 ENSMUSG00000022416 ENSMUSG00000050439 ENSMUSG00000042351 ENSMUSG00000022408 ENSMUSG00000047888 ENSMUSG00000022407 ENSMUSG00000103565 ENSMUSG00000042303 ENSMUSG00000042292 ENSMUSG00000050164 ENSMUSG00000022404 ENSMUSG00000022403 ENSMUSG00000047108 ENSMUSG00000022400 ENSMUSG00000091198 ENSMUSG00000055024 ENSMUSG00000022394 ENSMUSG00000063765 ENSMUSG00000022391 ENSMUSG00000022390 ENSMUSG00000022389 ENSMUSG00000069439 ENSMUSG00000048546 ENSMUSG00000061360 ENSMUSG00000022477 ENSMUSG00000022476 ENSMUSG00000042109 Click to hide this line (Hsap) Hsap terminal node Hsap - Chr:22 ENSG00000128268 ENSG00000100335 ENSG00000128272 ENSG00000187051 ENSG00000100346 ENSG00000176177 ENSG00000100351 ENSG00000133477 ENSG00000100354 ENSG00000239900 ENSG00000100359 ENSG00000196588 ENSG00000128285 ENSG00000100372 ENSG00000100380 ENSG00000172404 ENSG00000100387 ENSG00000100393 ENSG00000100395 ENSG00000100399 ENSG00000100401 ENSG00000100403 ENSG00000167074 ENSG00000183864 ENSG00000100410 ENSG00000100412 ENSG00000100413 ENSG00000172346 ENSG00000100417 ENSG00000100418 Click to hide this line (Lcha) Lcha terminal node Lcha - Chr:JH129091.1 ENSLACG00000002415 ENSLACG00000003326 ENSLACG00000005069 ENSLACG00000006946 Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to show this node (28) 28 speciation node (click to collapse) Click to hide this line (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) 16_Ascidiacea (~10 My ago) - block_529 Fam002573.E.a.d Click to hide this line (15_Phlebobranchia) 15_Phlebobranchia speciation node (click to collapse) 15_Phlebobranchia (~10 My ago) - block_1094 Fam002573.E.a.d Click to hide this line (14_Phallusia) 14_Phallusia speciation node (click to collapse) 14_Phallusia (~10 My ago) - block_344 Fam000478 Fam009177.c.b.a.b.b Fam009177.c.b.a.b.a Click to hide this line (Phmamm) Phmamm terminal node Phmamm - Chr:S285 Phmamm.CG.MTP2014.S285.g06684 Phmamm.CG.MTP2014.S285.g06685 Phmamm.CG.MTP2014.S285.g06686 Phmamm.CG.MTP2014.S285.g06687 Phmamm.CG.MTP2014.S285.g06688 Phmamm.CG.MTP2014.S285.g06689 Phmamm.CG.MTP2014.S285.g06690 Phmamm.CG.MTP2014.S285.g06691 Phmamm.CG.MTP2014.S285.g06692 Phmamm.CG.MTP2014.S285.g06693 Phmamm.CG.MTP2014.S285.g06694 Phmamm.CG.MTP2014.S285.g06695 Phmamm.CG.MTP2014.S285.g06697 Phmamm.CG.MTP2014.S285.g06698 Phmamm.CG.MTP2014.S285.g06699 Phmamm.CG.MTP2014.S285.g06700 Phmamm.CG.MTP2014.S285.g06701 Phmamm.CG.MTP2014.S285.g06702 Phmamm.CG.MTP2014.S285.g06703 Phmamm.CG.MTP2014.S285.g06704 Click to hide this line (Phfumi) Phfumi terminal node Phfumi - Chr:S546 Phfumi.CG.MTP2014.S546.g02287 Phfumi.CG.MTP2014.S546.g02289 Phfumi.CG.MTP2014.S546.g02290 Phfumi.CG.MTP2014.S546.g02291 Click to hide this line (11_Ciona) 11_Ciona speciation node (click to collapse) 11_Ciona (~10 My ago) - block_26 Fam002278.E.b Fam002273.C Fam009217 Fam002018.C Fam010268.a.b Fam002411.BC Fam006730.b Fam002573.E.a.d Fam004838.b.a Fam004419 Fam009216 Fam004576.A Fam004920.B Fam006919.a Click to hide this line (Cisavi) Cisavi terminal node Cisavi - Chr:reftig_19 Cisavi.CG.ENS81.R19.4838346-4841426 (ENSCSAVG00000011393) Cisavi.CG.ENS81.R19.4846948-4887952 (ENSCSAVG00000011394) Cisavi.CG.ENS81.R19.4901574-4905495 (ENSCSAVG00000011484) Cisavi.CG.ENS81.R19.4956498-4960053 (ENSCSAVG00000011485) Cisavi.CG.ENS81.R19.4963691-4979886 (ENSCSAVG00000011486) Cisavi.CG.ENS81.R19.4985722-5000949 (ENSCSAVG00000011504) Cisavi.CG.ENS81.R19.5005087-5010493 (ENSCSAVG00000011579) Cisavi.CG.ENS81.R19.5011155-5014284 (ENSCSAVG00000011582) Cisavi.CG.ENS81.R19.5014338-5018076 (ENSCSAVG00000011585) Cisavi.CG.ENS81.R19.5021723-5026571 (ENSCSAVG00000011588) Cisavi.CG.ENS81.R19.5033811-5035608 (ENSCSAVG00000011592) Cisavi.CG.ENS81.R19.5034927-5040692 (ENSCSAVG00000011594) Cisavi.CG.ENS81.R19.5056325-5056894 (ENSCSAVG00000011595) Cisavi.CG.ENS81.R19.5057812-5059572 (ENSCSAVG00000011596) Cisavi.CG.ENS81.R19.5060541-5061214 (ENSCSAVG00000011597) Cisavi.CG.ENS81.R19.5072434-5081385 (ENSCSAVG00000011601) Cisavi.CG.ENS81.R19.5085211-5093527 (ENSCSAVG00000011602) Cisavi.CG.ENS81.R19.5096439-5098125 (ENSCSAVG00000011603) Cisavi.CG.ENS81.R19.5099328-5104550 (ENSCSAVG00000011609) Cisavi.CG.ENS81.R19.5110135-5111530 (ENSCSAVG00000011612) Cisavi.CG.ENS81.R19.5112018-5113308 (ENSCSAVG00000011614) Cisavi.CG.ENS81.R19.5114695-5116693 (ENSCSAVG00000011615) Cisavi.CG.ENS81.R19.5119526-5120429 (ENSCSAVG00000011617) Cisavi.CG.ENS81.R19.5121698-5122626 (ENSCSAVG00000011618) Cisavi.CG.ENS81.R19.5125646-5127763 (ENSCSAVG00000011619) Cisavi.CG.ENS81.R19.5128186-5129385 (ENSCSAVG00000011620) Cisavi.CG.ENS81.R19.5135514-5149011 (ENSCSAVG00000011621) Click to hide this line (Cirobu) Cirobu terminal node Cirobu - Chr:KhC2 KH2012:KH.C2.543 KH2012:KH.C2.124 KH2012:KH.C2.65 KH2012:KH.C2.612 KH2012:KH.C2.714 KH2012:KH.C2.642 KH2012:KH.C2.839 KH2012:KH.C2.39 KH2012:KH.C2.966 KH2012:KH.C2.466 KH2012:KH.C2.767 KH2012:KH.C2.520 KH2012:KH.C2.430 KH2012:KH.C2.496 KH2012:KH.C2.450 KH2012:KH.C2.11 KH2012:KH.C2.856 KH2012:KH.C2.548 KH2012:KH.C2.117 KH2012:KH.C2.175 KH2012:KH.C2.47 KH2012:KH.C2.712 KH2012:KH.C2.693 KH2012:KH.C2.140 KH2012:KH.C2.389 KH2012:KH.C2.202 KH2012:KH.C2.652 KH2012:KH.C2.383 KH2012:KH.C2.659 KH2012:KH.C2.911 Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to hide this line (2_Molgula) 2_Molgula speciation node (click to collapse) 2_Molgula (~10 My ago) - block_578 Fam002573.E.a.d Click to hide this line (Moocul) Moocul terminal node Moocul - Chr:S114620 Moocul.CG.ELv1_2.S114620.g13539 Moocul.CG.ELv1_2.S114620.g13540 Moocul.CG.ELv1_2.S114620.g13541 Moocul.CG.ELv1_2.S114620.g13542 Moocul.CG.ELv1_2.S114620.g13543 Moocul.CG.ELv1_2.S114620.g13544 Moocul.CG.ELv1_2.S114620.g13545 Moocul.CG.ELv1_2.S114620.g13546 Moocul.CG.ELv1_2.S114620.g13548 Moocul.CG.ELv1_2.S114620.g13549 Moocul.CG.ELv1_2.S114620.g13550 Moocul.CG.ELv1_2.S114620.g13551 Moocul.CG.ELv1_2.S114620.g13552 Moocul.CG.ELv1_2.S114620.g13553 Moocul.CG.ELv1_2.S114620.g13554 Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S327016 Moocci.CG.ELv1_2.S327016.g08613 Moocci.CG.ELv1_2.S327016.g08614 Moocci.CG.ELv1_2.S327016.g08615 Moocci.CG.ELv1_2.S327016.g08618 Moocci.CG.ELv1_2.S327016.g08619 Moocci.CG.ELv1_2.S327016.g08620 Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to show this node (33) 33 speciation node (click to collapse) Click to hide this line (Spur) Spur terminal node Spur - Chr:Scaffold18 SPU_019835 SPU_013111 SPU_012593 SPU_026276 SPU_013762 SPU_003068 SPU_003074 SPU_003067 SPU_025122 SPU_003075 SPU_003066 SPU_003065 SPU_016740 SPU_008658 SPU_019206 SPU_019207 SPU_026046 SPU_012801 SPU_026045 SPU_014138 SPU_014137 SPU_014136 SPU_014135 SPU_008221 SPU_022897 SPU_027237 SPU_027242 SPU_000036 Click to show this node (34_Deuterostomia) 34_Deuterostomia duplication node (click to collapse) Click to show this node (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) Click to hide this line (30_Chordata) 30_Chordata speciation node (click to collapse) 30_Chordata (~10 My ago) Click to hide this line (Bbel) Bbel terminal node Bbel - scaffold104 016970R 016980R 016990F 017000R 017010R 017020R 017030F 017040R 017050R 017060R 017070R 017080F 017090F 017100F 017110R 017130F 017140R 017150R 017160R 017170F 017180R 017190R 017200F 017210F 017220R 017230R 017240F 017250F 017260R 017270R Click to show this node (28) 28 speciation node (click to collapse) Click to show this node (26_Sarcopterygii) 26_Sarcopterygii duplication node (click to collapse) Click to show this node (26_Sarcopterygii) 26_Sarcopterygii duplication node (click to collapse) Click to show this node (26_Sarcopterygii) 26_Sarcopterygii speciation node (click to collapse) Click to show this node (25_Amniota) 25_Amniota speciation node (click to collapse) Click to hide this line (24_Euarchontoglires) 24_Euarchontoglires speciation node (click to collapse) 24_Euarchontoglires (~10 My ago) - block_68 Fam001699.NB.a Fam001718.B Fam002700.D.b.a Fam002476.a Fam005911.b Fam004249 Fam002445.E Fam008212.f Fam002999.B.b Fam003764.a Fam003270.a Fam005972 Fam002445.J.b.b.a.d.b Fam002002.V.b.a.b Fam002002.T.b Fam002539.F.e.b.b Fam012801.A Fam005271.b.a Fam006316.b Fam001042.A.b.a Fam002334.M.d.b.b Fam005053.a.a Fam003970.b.a Fam012201.A.b Fam005894.b Fam006528.c.a Fam003541.c Fam001861.DB Fam001832.E.b Fam001719.RB.b Click to hide this line (Hsap) Hsap terminal node Hsap - Chr:19 ENSG00000105185 ENSG00000105186 ENSG00000186326 ENSG00000213965 ENSG00000173809 ENSG00000021488 ENSG00000121289 ENSG00000131944 ENSG00000131941 ENSG00000076650 ENSG00000166359 ENSG00000130881 ENSG00000130876 ENSG00000245848 ENSG00000153879 ENSG00000124302 ENSG00000153885 ENSG00000257103 ENSG00000166398 ENSG00000105220 ENSG00000266953 ENSG00000126249 ENSG00000126261 ENSG00000142279 ENSG00000205209 ENSG00000089335 ENSG00000197841 ENSG00000153896 ENSG00000168661 ENSG00000180884 Click to hide this line (Mmus) Mmus terminal node Mmus - Chr:7 ENSMUSG00000046438 ENSMUSG00000078753 ENSMUSG00000066586 ENSMUSG00000066584 ENSMUSG00000066583 ENSMUSG00000078752 ENSMUSG00000036459 ENSMUSG00000052997 ENSMUSG00000002635 ENSMUSG00000036427 ENSMUSG00000066571 ENSMUSG00000078380 ENSMUSG00000066568 ENSMUSG00000030499 ENSMUSG00000060402 ENSMUSG00000056216 ENSMUSG00000034957 ENSMUSG00000030495 ENSMUSG00000001802 ENSMUSG00000063808 ENSMUSG00000030494 ENSMUSG00000030493 ENSMUSG00000023072 ENSMUSG00000030492 ENSMUSG00000030491 ENSMUSG00000034875 ENSMUSG00000056043 ENSMUSG00000034867 ENSMUSG00000030417 ENSMUSG00000043671 Click to hide this line (26_Sarcopterygii) 26_Sarcopterygii speciation node (click to collapse) 26_Sarcopterygii (~10 My ago) - block_632 Fam002002.V.b.a.b Fam002002.T Click to hide this line (Lcha) Lcha terminal node Lcha - Chr:JH129159.1 ENSLACG00000005088 ENSLACG00000005924 Click to show this node (25_Amniota) 25_Amniota speciation node (click to collapse) Click to show this node (21_Archelosauria) 21_Archelosauria duplication node (click to collapse) Click to hide this line (21_Archelosauria) 21_Archelosauria speciation node (click to collapse) 21_Archelosauria (~10 My ago) - block_51 Fam004265 Fam004260.A.b Fam001699.NB.a Fam001718.B Fam002700.D.b.a Fam002476.a Fam004249 Fam002445.E Fam008212.f Fam002999.B.a Fam003764.a Fam003270.a Fam002445.J.b.b.a.d.b Fam002002.V.b.a.b Fam002002.T.a Click to hide this line (Psin) Psin terminal node Psin - Chr:JH206634.1 ENSPSIG00000006224 ENSPSIG00000009462 ENSPSIG00000011060 ENSPSIG00000011453 ENSPSIG00000013433 ENSPSIG00000015007 ENSPSIG00000015032 ENSPSIG00000015514 ENSPSIG00000000363 ENSPSIG00000000373 Click to hide this line (Ggal) Ggal terminal node Ggal - Chr:11 ENSGALG00000004630 ENSGALG00000004648 ENSGALG00000004671 ENSGALG00000004675 ENSGALG00000023650 ENSGALG00000004704 ENSGALG00000021158 ENSGALG00000004756 ENSGALG00000004814 ENSGALG00000004839 ENSGALG00000004853 ENSGALG00000004729 ENSGALG00000027621 ENSGALG00000026525 ENSGALG00000004867 ENSGALG00000004903 ENSGALG00000004907 ENSGALG00000028965 ENSGALG00000004935 ENSGALG00000004943 ENSGALG00000004949 ENSGALG00000004951 ENSGALG00000004956 ENSGALG00000025864 ENSGALG00000005006 ENSGALG00000005010 ENSGALG00000005114 ENSGALG00000005132 ENSGALG00000005140 ENSGALG00000005146 Click to show this node (21_Archelosauria) 21_Archelosauria speciation node (click to collapse) Click to hide this line (Psin) Psin terminal node Psin - Chr:JH206147.1 ENSPSIG00000008065 ENSPSIG00000008351 ENSPSIG00000008763 ENSPSIG00000008924 ENSPSIG00000009441 Click to hide this line (34_Deuterostomia) 34_Deuterostomia speciation node (click to collapse) 34_Deuterostomia (~10 My ago) Click to show this node (33) 33 speciation node (click to collapse) Click to hide this line (Skow) Skow terminal node Skow - scaffold_61 Sakowv30038721m.g Sakowv30038694m.g Sakowv30038683m.g Sakowv30038690m.g Sakowv30038689m.g Sakowv30038671m.g Sakowv30038734m.g Sakowv30038752m.g Sakowv30038651m.g Sakowv30038650m.g Sakowv30038737m.g Sakowv30038659m.g Sakowv30038735m.g Sakowv30038656m.g Sakowv30038653m.g Sakowv30038738m.g Sakowv30038667m.g Sakowv30038696m.g Sakowv30038720m.g Sakowv30038674m.g Sakowv30038688m.g Sakowv30038676m.g Sakowv30038754m.g Sakowv30038742m.g Sakowv30038712m.g Sakowv30038739m.g Sakowv30038684m.g Sakowv30038692m.g Sakowv30038753m.g Sakowv30038748m.g Click to show this node (30_Chordata) 30_Chordata speciation node (click to collapse) Click to show this node (28) 28 speciation node (click to collapse) Click to show this node (16_Ascidiacea) 16_Ascidiacea duplication node (click to collapse) Click to hide this line (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) 16_Ascidiacea (~10 My ago) Click to hide this line (15_Phlebobranchia) 15_Phlebobranchia speciation node (click to collapse) 15_Phlebobranchia (~10 My ago) Click to hide this line (14_Phallusia) 14_Phallusia speciation node (click to collapse) 14_Phallusia (~10 My ago) Click to hide this line (Phfumi) Phfumi terminal node Phfumi - Chr:S10981 Click to hide this line (Phmamm) Phmamm terminal node Phmamm - Chr:S447 Phmamm.CG.MTP2014.S447.g08838 Phmamm.CG.MTP2014.S447.g08840 Phmamm.CG.MTP2014.S447.g08841 Phmamm.CG.MTP2014.S447.g08842 Phmamm.CG.MTP2014.S447.g08843 Phmamm.CG.MTP2014.S447.g08844 Phmamm.CG.MTP2014.S447.g08845 Phmamm.CG.MTP2014.S447.g08846 Phmamm.CG.MTP2014.S447.g08847 Phmamm.CG.MTP2014.S447.g08848 Phmamm.CG.MTP2014.S447.g08849 Phmamm.CG.MTP2014.S447.g08850 Phmamm.CG.MTP2014.S447.g08851 Phmamm.CG.MTP2014.S447.g08852 Phmamm.CG.MTP2014.S447.g08853 Click to show this node (11_Ciona) 11_Ciona duplication node (click to collapse) Click to show this node (11_Ciona) 11_Ciona duplication node (click to collapse) Click to show this node (11_Ciona) 11_Ciona speciation node (click to collapse) Click to hide this line (Cirobu) Cirobu terminal node Cirobu - Chr:KhL95 KH2012:KH.L95.9 KH2012:KH.L95.2 KH2012:KH.L95.5 KH2012:KH.L95.10 KH2012:KH.L95.18 KH2012:KH.L95.4 KH2012:KH.L95.19 KH2012:KH.L95.17 KH2012:KH.L95.16 KH2012:KH.L95.12 KH2012:KH.L95.6 KH2012:KH.L95.13 KH2012:KH.L95.1 KH2012:KH.L95.20 KH2012:KH.L95.8 KH2012:KH.L95.14 KH2012:KH.L95.11 KH2012:KH.L95.3 Click to hide this line (11_Ciona) 11_Ciona speciation node (click to collapse) 11_Ciona (~10 My ago) - block_220 Fam000779.A Fam010132 Fam001121.b.b.a Fam002819.D Fam007489.b Click to hide this line (Cirobu) Cirobu terminal node Cirobu - Chr:KhL95 KH2012:KH.L95.9 KH2012:KH.L95.2 KH2012:KH.L95.5 KH2012:KH.L95.10 KH2012:KH.L95.18 KH2012:KH.L95.4 KH2012:KH.L95.19 KH2012:KH.L95.17 KH2012:KH.L95.16 KH2012:KH.L95.12 KH2012:KH.L95.6 KH2012:KH.L95.13 KH2012:KH.L95.1 KH2012:KH.L95.20 KH2012:KH.L95.8 KH2012:KH.L95.14 KH2012:KH.L95.11 KH2012:KH.L95.3 Click to hide this line (Cisavi) Cisavi terminal node Cisavi - Chr:reftig_16 Cisavi.CG.ENS81.R16.4360635-4365162 (ENSCSAVG00000011496) Cisavi.CG.ENS81.R16.4365843-4368253 (ENSCSAVG00000011497) Cisavi.CG.ENS81.R16.4368521-4372614 (ENSCSAVG00000011498) Cisavi.CG.ENS81.R16.4374106-4374720 (ENSCSAVG00000011499) Cisavi.CG.ENS81.R16.4375862-4376662 (ENSCSAVG00000011500) Cisavi.CG.ENS81.R16.4378686-4379124 (ENSCSAVG00000011501) Cisavi.CG.ENS81.R16.4379400-4384232 (ENSCSAVG00000011502) Cisavi.CG.ENS81.R16.4393922-4397579 (ENSCSAVG00000011503) Cisavi.CG.ENS81.R16.4402564-4412461 (ENSCSAVG00000011505) Cisavi.CG.ENS81.R16.4415660-4419318 (ENSCSAVG00000011506) Cisavi.CG.ENS81.R16.4430602-4432604 (ENSCSAVG00000011507) Cisavi.CG.ENS81.R16.4432337-4434999 (ENSCSAVG00000011508) Cisavi.CG.ENS81.R16.4435428-4437262 (ENSCSAVG00000011509) Cisavi.CG.ENS81.R16.4440197-4443505 (ENSCSAVG00000011510) Cisavi.CG.ENS81.R16.4446199-4447842 (ENSCSAVG00000011511) Cisavi.CG.ENS81.R16.4465435-4469610 (ENSCSAVG00000011514) Cisavi.CG.ENS81.R16.4471528-4476504 (ENSCSAVG00000011515) Cisavi.CG.ENS81.R16.4479241-4483439 (ENSCSAVG00000011516) Cisavi.CG.ENS81.R16.4483928-4486576 (ENSCSAVG00000011517) Cisavi.CG.ENS81.R16.4487342-4489972 (ENSCSAVG00000011518) Cisavi.CG.ENS81.R16.4490633-4494151 (ENSCSAVG00000011519) Cisavi.CG.ENS81.R16.4494847-4495813 (ENSCSAVG00000011520) Cisavi.CG.ENS81.R16.4497902-4500512 (ENSCSAVG00000011521) Cisavi.CG.ENS81.R16.4524625-4527264 (ENSCSAVG00000011522) Cisavi.CG.ENS81.R16.4591168-4592910 (ENSCSAVG00000011523) Cisavi.CG.ENS81.R16.4594493-4598336 (ENSCSAVG00000011524) Cisavi.CG.ENS81.R16.4605202-4610907 (ENSCSAVG00000011525) Cisavi.CG.ENS81.R16.4611469-4615565 (ENSCSAVG00000011526) Cisavi.CG.ENS81.R16.4617829-4622541 (ENSCSAVG00000011527) Click to show this node (11_Ciona) 11_Ciona speciation node (click to collapse) Click to hide this line (Cisavi) Cisavi terminal node Cisavi - Chr:reftig_16 Cisavi.CG.ENS81.R16.4365843-4368253 (ENSCSAVG00000011497) Cisavi.CG.ENS81.R16.4368521-4372614 (ENSCSAVG00000011498) Cisavi.CG.ENS81.R16.4374106-4374720 (ENSCSAVG00000011499) Cisavi.CG.ENS81.R16.4375862-4376662 (ENSCSAVG00000011500) Cisavi.CG.ENS81.R16.4378686-4379124 (ENSCSAVG00000011501) Cisavi.CG.ENS81.R16.4379400-4384232 (ENSCSAVG00000011502) Cisavi.CG.ENS81.R16.4393922-4397579 (ENSCSAVG00000011503) Cisavi.CG.ENS81.R16.4402564-4412461 (ENSCSAVG00000011505) Cisavi.CG.ENS81.R16.4415660-4419318 (ENSCSAVG00000011506) Cisavi.CG.ENS81.R16.4430602-4432604 (ENSCSAVG00000011507) Cisavi.CG.ENS81.R16.4432337-4434999 (ENSCSAVG00000011508) Cisavi.CG.ENS81.R16.4435428-4437262 (ENSCSAVG00000011509) Cisavi.CG.ENS81.R16.4440197-4443505 (ENSCSAVG00000011510) Cisavi.CG.ENS81.R16.4446199-4447842 (ENSCSAVG00000011511) Cisavi.CG.ENS81.R16.4465435-4469610 (ENSCSAVG00000011514) Cisavi.CG.ENS81.R16.4471528-4476504 (ENSCSAVG00000011515) Cisavi.CG.ENS81.R16.4479241-4483439 (ENSCSAVG00000011516) Cisavi.CG.ENS81.R16.4483928-4486576 (ENSCSAVG00000011517) Cisavi.CG.ENS81.R16.4487342-4489972 (ENSCSAVG00000011518) Cisavi.CG.ENS81.R16.4490633-4494151 (ENSCSAVG00000011519) Cisavi.CG.ENS81.R16.4494847-4495813 (ENSCSAVG00000011520) Cisavi.CG.ENS81.R16.4497902-4500512 (ENSCSAVG00000011521) Cisavi.CG.ENS81.R16.4524625-4527264 (ENSCSAVG00000011522) Cisavi.CG.ENS81.R16.4591168-4592910 (ENSCSAVG00000011523) Cisavi.CG.ENS81.R16.4594493-4598336 (ENSCSAVG00000011524) Cisavi.CG.ENS81.R16.4605202-4610907 (ENSCSAVG00000011525) Cisavi.CG.ENS81.R16.4611469-4615565 (ENSCSAVG00000011526) Cisavi.CG.ENS81.R16.4617829-4622541 (ENSCSAVG00000011527) Cisavi.CG.ENS81.R16.4638030-4640711 (ENSCSAVG00000011528) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to hide this line (7) 7 speciation node (click to collapse) 7 (~10 My ago) Click to show this node (6_Halocynthia) 6_Halocynthia duplication node (click to collapse) Click to show this node (6_Halocynthia) 6_Halocynthia speciation node (click to collapse) Click to hide this line (Haaura) Haaura terminal node Haaura - Chr:S2 Haaura.CG.MTP2014.S2.g00086 Haaura.CG.MTP2014.S2.g00087 Haaura.CG.MTP2014.S2.g00088 Haaura.CG.MTP2014.S2.g00089 Haaura.CG.MTP2014.S2.g00090 Haaura.CG.MTP2014.S2.g00091 Haaura.CG.MTP2014.S2.g00092 Haaura.CG.MTP2014.S2.g00093 Haaura.CG.MTP2014.S2.g00094 Haaura.CG.MTP2014.S2.g00095 Haaura.CG.MTP2014.S2.g00096 Haaura.CG.MTP2014.S2.g00097 Haaura.CG.MTP2014.S2.g00098 Haaura.CG.MTP2014.S2.g00099 Haaura.CG.MTP2014.S2.g00100 Haaura.CG.MTP2014.S2.g00102 Haaura.CG.MTP2014.S2.g00103 Haaura.CG.MTP2014.S2.g00104 Click to show this node (6_Halocynthia) 6_Halocynthia speciation node (click to collapse) Click to hide this line (Harore) Harore terminal node Harore - Chr:S16 Harore.CG.MTP2014.S16.g14108 Harore.CG.MTP2014.S16.g02177 Harore.CG.MTP2014.S16.g11455 Harore.CG.MTP2014.S16.g10322 Harore.CG.MTP2014.S16.g09724 Harore.CG.MTP2014.S16.g07173 Harore.CG.MTP2014.S16.g07913 Harore.CG.MTP2014.S16.g05113 Harore.CG.MTP2014.S16.g06507 Harore.CG.MTP2014.S16.g03501 Harore.CG.MTP2014.S16.g00127 Harore.CG.MTP2014.S16.g02124 Harore.CG.MTP2014.S16.g07301 Harore.CG.MTP2014.S16.g13814 Harore.CG.MTP2014.S16.g12943 Harore.CG.MTP2014.S16.g14630 Harore.CG.MTP2014.S16.g00583 Harore.CG.MTP2014.S16.g00667 Harore.CG.MTP2014.S16.g12004 Harore.CG.MTP2014.S16.g06440 Harore.CG.MTP2014.S16.g11070 Harore.CG.MTP2014.S16.g08293 Harore.CG.MTP2014.S16.g10529 Harore.CG.MTP2014.S16.g13521 Harore.CG.MTP2014.S16.g08842 Harore.CG.MTP2014.S16.g14720 Harore.CG.MTP2014.S16.g03171 Harore.CG.MTP2014.S16.g05095 Harore.CG.MTP2014.S16.g09220 Harore.CG.MTP2014.S16.g02598 Click to show this node (Boschl) Boschl duplication node (click to collapse) Click to show this node (Boschl) Boschl duplication node (click to collapse) Click to hide this line (Boschl) Boschl terminal node Boschl - Chr:chr5 Boschl.CG.Botznik2013.chr5.g56950 Boschl.CG.Botznik2013.chr5.g47527 Boschl.CG.Botznik2013.chr5.g47528 Boschl.CG.Botznik2013.chr5.g56960 Boschl.CG.Botznik2013.chr5.g56979 Boschl.CG.Botznik2013.chr5.g56981 Boschl.CG.Botznik2013.chr5.g56999 Boschl.CG.Botznik2013.chr5.g57009 Boschl.CG.Botznik2013.chr5.g57011 Boschl.CG.Botznik2013.chr5.g57019 Boschl.CG.Botznik2013.chr5.g57031 Boschl.CG.Botznik2013.chr5.g57033 Boschl.CG.Botznik2013.chr5.g57038 Boschl.CG.Botznik2013.chr5.g57039 Boschl.CG.Botznik2013.chr5.g57040 Boschl.CG.Botznik2013.chr5.g57060 Boschl.CG.Botznik2013.chr5.g57061 Boschl.CG.Botznik2013.chr5.g57066 Boschl.CG.Botznik2013.chr5.g57070 Boschl.CG.Botznik2013.chr5.g57071 Boschl.CG.Botznik2013.chr5.g57073 Boschl.CG.Botznik2013.chr5.g57075 Boschl.CG.Botznik2013.chr5.g57077 Boschl.CG.Botznik2013.chr5.g57079 Boschl.CG.Botznik2013.chr5.g57087 Boschl.CG.Botznik2013.chr5.g57111 Boschl.CG.Botznik2013.chr5.g57125 Boschl.CG.Botznik2013.chr5.g57149 Boschl.CG.Botznik2013.chr5.g57151 Boschl.CG.Botznik2013.chr5.g57157 Click to hide this line (Boschl) Boschl terminal node Boschl - Chr:chrUn Boschl.CG.Botznik2013.chrUn.g64218 Boschl.CG.Botznik2013.chrUn.g64219 Boschl.CG.Botznik2013.chrUn.g64223 Boschl.CG.Botznik2013.chrUn.g64227 Boschl.CG.Botznik2013.chrUn.g64228 Boschl.CG.Botznik2013.chrUn.g64229 Boschl.CG.Botznik2013.chrUn.g64230 Boschl.CG.Botznik2013.chrUn.g64237 Boschl.CG.Botznik2013.chrUn.g64238 Boschl.CG.Botznik2013.chrUn.g64239 Boschl.CG.Botznik2013.chrUn.g64243 Boschl.CG.Botznik2013.chrUn.g64244 Boschl.CG.Botznik2013.chrUn.g64245 Boschl.CG.Botznik2013.chrUn.g64249 Boschl.CG.Botznik2013.chrUn.g64250 Boschl.CG.Botznik2013.chrUn.g64263 Boschl.CG.Botznik2013.chrUn.g64265 Boschl.CG.Botznik2013.chrUn.g64266 Boschl.CG.Botznik2013.chrUn.g64267 Boschl.CG.Botznik2013.chrUn.g64270 Boschl.CG.Botznik2013.chrUn.g64275 Boschl.CG.Botznik2013.chrUn.g64280 Boschl.CG.Botznik2013.chrUn.g64283 Boschl.CG.Botznik2013.chrUn.g64284 Boschl.CG.Botznik2013.chrUn.g64286 Boschl.CG.Botznik2013.chrUn.g64287 Boschl.CG.Botznik2013.chrUn.g64289 Boschl.CG.Botznik2013.chrUn.g64298 Boschl.CG.Botznik2013.chrUn.g64299 Boschl.CG.Botznik2013.chrUn.g64300 Click to show this node (Boschl) Boschl duplication node (click to collapse) Click to hide this line (Boschl) Boschl terminal node Boschl - Chr:chr4 Boschl.CG.Botznik2013.chr4.g63832 Boschl.CG.Botznik2013.chr4.g63833 Boschl.CG.Botznik2013.chr4.g64673 Boschl.CG.Botznik2013.chr4.g64722 Boschl.CG.Botznik2013.chr4.g64723 Boschl.CG.Botznik2013.chr4.g64810 Boschl.CG.Botznik2013.chr4.g64971 Boschl.CG.Botznik2013.chr4.g64972 Boschl.CG.Botznik2013.chr4.g65121 Boschl.CG.Botznik2013.chr4.g65122 Boschl.CG.Botznik2013.chr4.g65224 Boschl.CG.Botznik2013.chr4.g65225 Boschl.CG.Botznik2013.chr4.g65227 Boschl.CG.Botznik2013.chr4.g63891 Boschl.CG.Botznik2013.chr4.g63892 Boschl.CG.Botznik2013.chr4.g64204 Boschl.CG.Botznik2013.chr4.g62825 Boschl.CG.Botznik2013.chr4.g62153 Boschl.CG.Botznik2013.chr4.g62154 Boschl.CG.Botznik2013.chr4.g62871 Boschl.CG.Botznik2013.chr4.g62939 Boschl.CG.Botznik2013.chr4.g62940 Boschl.CG.Botznik2013.chr4.g62943 Boschl.CG.Botznik2013.chr4.g62947 Boschl.CG.Botznik2013.chr4.g62949 Boschl.CG.Botznik2013.chr4.g62950 Boschl.CG.Botznik2013.chr4.g62954 Boschl.CG.Botznik2013.chr4.g62955 Boschl.CG.Botznik2013.chr4.g63043 Boschl.CG.Botznik2013.chr4.g63044 Click to show this node (Boschl) Boschl duplication node (click to collapse) Click to hide this line (Boschl) Boschl terminal node Boschl - Chr:chr9 Boschl.CG.Botznik2013.chr9.g56314 Boschl.CG.Botznik2013.chr9.g56316 Boschl.CG.Botznik2013.chr9.g56317 Boschl.CG.Botznik2013.chr9.g56328 Boschl.CG.Botznik2013.chr9.g56339 Boschl.CG.Botznik2013.chr9.g56341 Boschl.CG.Botznik2013.chr9.g56358 Boschl.CG.Botznik2013.chr9.g56360 Boschl.CG.Botznik2013.chr9.g56381 Boschl.CG.Botznik2013.chr9.g56388 Boschl.CG.Botznik2013.chr9.g56389 Boschl.CG.Botznik2013.chr9.g47487 Boschl.CG.Botznik2013.chr9.g56404 Boschl.CG.Botznik2013.chr9.g56413 Boschl.CG.Botznik2013.chr9.g56443 Boschl.CG.Botznik2013.chr9.g56445 Boschl.CG.Botznik2013.chr9.g56453 Boschl.CG.Botznik2013.chr9.g56454 Boschl.CG.Botznik2013.chr9.g56460 Boschl.CG.Botznik2013.chr9.g47494 Boschl.CG.Botznik2013.chr9.g47495 Boschl.CG.Botznik2013.chr9.g56512 Boschl.CG.Botznik2013.chr9.g56533 Boschl.CG.Botznik2013.chr9.g56534 Boschl.CG.Botznik2013.chr9.g56536 Boschl.CG.Botznik2013.chr9.g56586 Boschl.CG.Botznik2013.chr9.g56598 Boschl.CG.Botznik2013.chr9.g56604 Boschl.CG.Botznik2013.chr9.g56611 Boschl.CG.Botznik2013.chr9.g56669 Click to hide this line (Boschl) Boschl terminal node Boschl - Chr:chrUn Boschl.CG.Botznik2013.chrUn.g62270 Boschl.CG.Botznik2013.chrUn.g62271 Boschl.CG.Botznik2013.chrUn.g62272 Boschl.CG.Botznik2013.chrUn.g62275 Boschl.CG.Botznik2013.chrUn.g62278 Boschl.CG.Botznik2013.chrUn.g62279 Boschl.CG.Botznik2013.chrUn.g62283 Boschl.CG.Botznik2013.chrUn.g62284 Boschl.CG.Botznik2013.chrUn.g62289 Boschl.CG.Botznik2013.chrUn.g62291 Boschl.CG.Botznik2013.chrUn.g62293 Boschl.CG.Botznik2013.chrUn.g62297 Boschl.CG.Botznik2013.chrUn.g62299 Boschl.CG.Botznik2013.chrUn.g62302 Boschl.CG.Botznik2013.chrUn.g62307 Boschl.CG.Botznik2013.chrUn.g62318 Boschl.CG.Botznik2013.chrUn.g62319 Boschl.CG.Botznik2013.chrUn.g62320 Boschl.CG.Botznik2013.chrUn.g62324 Boschl.CG.Botznik2013.chrUn.g62325 Boschl.CG.Botznik2013.chrUn.g62326 Boschl.CG.Botznik2013.chrUn.g62327 Boschl.CG.Botznik2013.chrUn.g62328 Boschl.CG.Botznik2013.chrUn.g62337 Boschl.CG.Botznik2013.chrUn.g62339 Boschl.CG.Botznik2013.chrUn.g62341 Boschl.CG.Botznik2013.chrUn.g62346 Boschl.CG.Botznik2013.chrUn.g62347 Boschl.CG.Botznik2013.chrUn.g62348 Boschl.CG.Botznik2013.chrUn.g62349 Click to show this node (16_Ascidiacea) 16_Ascidiacea speciation node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to show this node (2_Molgula) 2_Molgula duplication node (click to collapse) Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S407313 Moocci.CG.ELv1_2.S407313.g12082 Moocci.CG.ELv1_2.S407313.g12083 Moocci.CG.ELv1_2.S407313.g12084 Moocci.CG.ELv1_2.S407313.g12085 Moocci.CG.ELv1_2.S407313.g12086 Moocci.CG.ELv1_2.S407313.g12087 Moocci.CG.ELv1_2.S407313.g12088 Moocci.CG.ELv1_2.S407313.g12089 Moocci.CG.ELv1_2.S407313.g12091 Moocci.CG.ELv1_2.S407313.g12092 Moocci.CG.ELv1_2.S407313.g12093 Click to hide this line (2_Molgula) 2_Molgula speciation node (click to collapse) 2_Molgula (~10 My ago) Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S543376 Moocci.CG.ELv1_2.S543376.g20888 Moocci.CG.ELv1_2.S543376.g20889 Moocci.CG.ELv1_2.S543376.g20890 Moocci.CG.ELv1_2.S543376.g20891 Click to hide this line (Moocul) Moocul terminal node Moocul - Chr:S114509 Moocul.CG.ELv1_2.S114509.g13476 Moocul.CG.ELv1_2.S114509.g13477 Moocul.CG.ELv1_2.S114509.g13478 Moocul.CG.ELv1_2.S114509.g13479 Moocul.CG.ELv1_2.S114509.g13480 Moocul.CG.ELv1_2.S114509.g13481 KH2012:KH.C10.433 KH2012:KH.C10.241 Fam002056.D Fam002056.D KH2012:KH.C10.358 Phmamm.CG.MTP2014.S66.g02365 KH2012:KH.C10.515 Fam009383 Fam009383 KH2012:KH.C10.253 Phmamm.CG.MTP2014.S66.g02364 KH2012:KH.C10.220 KH2012:KH.C10.476 Cisavi.CG.ENS81.R72.1778895-1805607 (ENSCSAVG00000006353) KH2012:KH.C10.166 KH2012:KH.C10.203 KH2012:KH.C10.463 KH2012:KH.C10.552 Fam002923.A.b.a KH2012:KH.C10.125 Fam002036.J Fam002036.J Fam002036.J Fam002036.J KH2012:KH.C10.517 Cisavi.CG.ENS81.R72.2330955-2333544 (ENSCSAVG00000006570) Phmamm.CG.MTP2014.S66.g02367 Fam002036.J Moocci.CG.ELv1_2.S327016.g08617 Fam002036.J Haaura.CG.MTP2014.S364.g04586 Harore.CG.MTP2014.S277.g06998 ENSLACG00000010355 Fam002036.J.b Fam002036.J.b ENSGALG00000016972 ENSPSIG00000007498 Fam002036.J.b ENSMUSG00000022009 ENSG00000083635 Moocci.CG.ELv1_2.S327016.g08617 Moocci.CG.ELv1_2.S327016.g08616 Fam002036.K 193960R Fam002036.K Sakowv30017606m.g SPU_022141 Moocci.CG.ELv1_2.S300533.g07601 Boschl.CG.Botznik2013.chrUn.g04016 Fam002036.B Haaura.CG.MTP2014.S546.g05668 Harore.CG.MTP2014.S191.g07476 292630R Fam002036.D Fam002036.D SPU_019101 Sakowv30010515m.g Fam002036.D Fam002036.D Fam002036.D ENSGALG00000012003 ENSPSIG00000004711 Fam002036.D ENSMUSG00000022401 ENSG00000196236 ENSLACG00000004413 Fam002036.E Fam002036.E Fam002036.E Phmamm.CG.MTP2014.S285.g06696 Phfumi.CG.MTP2014.S546.g02288 Fam002036.E Cisavi.CG.ENS81.R19.5064822-5068192 (ENSCSAVG00000011599) KH2012:KH.C2.1094 Fam002036.E Moocul.CG.ELv1_2.S114620.g13547 Moocci.CG.ELv1_2.S327016.g08616 SPU_019205 Fam002036.G 017120F Fam002036.G.a.a ENSG00000124299 ENSMUSG00000063931 Fam002036.G.a.b ENSLACG00000002894 Fam002036.G.a.b.a ENSPSIG00000017231 ENSGALG00000004899 ENSPSIG00000008196 Fam002036.H Sakowv30038682m.g Fam002036.H.a Fam002036.H.a Fam002036.H.a Phfumi.CG.MTP2014.S10981.g08715 Phmamm.CG.MTP2014.S447.g08839 KH2012:KH.L95.7 KH2012:KH.L95.15 Fam002036.H.a.a.b KH2012:KH.L95.7 KH2012:KH.L95.15 Cisavi.CG.ENS81.R16.4447691-4450591 (ENSCSAVG00000011512) Cisavi.CG.ENS81.R16.4455886-4465416 (ENSCSAVG00000011513) Cisavi.CG.ENS81.R16.4447691-4450591 (ENSCSAVG00000011512) Cisavi.CG.ENS81.R16.4455886-4465416 (ENSCSAVG00000011513) Fam002036.H.a Haaura.CG.MTP2014.S2.g00101 Harore.CG.MTP2014.S16.g09648 Boschl.CG.Botznik2013.chr5.g57055 Boschl.CG.Botznik2013.chrUn.g64257 Boschl.CG.Botznik2013.chr4.g65766 Boschl.CG.Botznik2013.chr9.g56444 Boschl.CG.Botznik2013.chrUn.g62313 Moocci.CG.ELv1_2.S407313.g12090 Fam002036.H.b.b Moocci.CG.ELv1_2.S543376.g20892 Moocul.CG.ELv1_2.S114509.g13482 KH2012:KH.C10.462 KH2012:KH.C10.626 KH2012:KH.C10.184 KH2012:KH.C10.58 Fam008346 KH2012:KH.C10.164 Phmamm.CG.MTP2014.S66.g02370 KH2012:KH.C10.39 KH2012:KH.C10.427 KH2012:KH.C10.350 Fam003873.A Fam003873.A KH2012:KH.C10.106 Phmamm.CG.MTP2014.S66.g02366 KH2012:KH.C10.607 Phmamm.CG.MTP2014.S66.g02363 KH2012:KH.C10.576 Phmamm.CG.MTP2014.S66.g02361 KH2012:KH.C10.525 KH2012:KH.C10.537 Fam006799.a.a KH2012:KH.C10.551 Cisavi.CG.ENS81.R72.2343359-2370353 (ENSCSAVG00000006573) KH2012:KH.C10.539 KH2012:KH.C10.295 KH2012:KH.C10.320 Phmamm.CG.MTP2014.S66.g02362 KH2012:KH.C10.62