Reference Gene Name: Cisavi.CG.ENS81.R99.972667-976859 (ENSCSAVG00000005439) Ensembl
Reference Species : Cisavi
Root Species : 16_Ascidiacea (~10 million years) 		16_Ascidiacea Link Wikipedia to Cisavi Link Ensembl
×2 ÷2 Center the view on the reference gene Shift 1 gene on the left Shift 5 genes on the left Shift 1 gene on the right Shift 5 genes on the right Zoom out Show 1 less gene on each side Show 1 more gene on each side Show half the number of genes on each side Show twice more genes on each side Zoom in
Schematic scale
Genomic scale
dN/dS Ratio
Protein Similarity
CNE Track
16_Ascidiacea speciation node (click to collapse) 16_Ascidiacea (~10 My ago) Click to hide this line (15_Phlebobranchia) 15_Phlebobranchia speciation node (click to collapse) 15_Phlebobranchia (~10 My ago) Click to hide this line (11_Ciona) 11_Ciona speciation node (click to collapse) 11_Ciona (~10 My ago) - block_813 Click to hide this line (Cisavi) Cisavi terminal node Cisavi - Chr:reftig_99 Click to hide this line (Cirobu) Cirobu terminal node Cirobu - Chr:KhC13 KH2012:KH.C13.105 KH2012:KH.C13.48 KH2012:KH.C13.66 KH2012:KH.C13.72 KH2012:KH.C13.84 KH2012:KH.C13.113 KH2012:KH.C13.76 KH2012:KH.C13.139 KH2012:KH.C13.154 KH2012:KH.C13.168 KH2012:KH.C13.128 KH2012:KH.C13.138 KH2012:KH.C13.68 KH2012:KH.C13.25 KH2012:KH.C13.104 KH2012:KH.C13.43 KH2012:KH.C13.186 KH2012:KH.C13.184 KH2012:KH.C13.20 KH2012:KH.C13.28 KH2012:KH.C13.32 KH2012:KH.C13.6 KH2012:KH.C13.142 KH2012:KH.C13.29 KH2012:KH.C13.152 KH2012:KH.C13.23 KH2012:KH.C13.101 KH2012:KH.C13.189 KH2012:KH.C13.92 Click to show this node (14_Phallusia) 14_Phallusia speciation node (click to collapse) Click to hide this line (Phmamm) Phmamm terminal node Phmamm - Chr:S30 Phmamm.CG.MTP2014.S30.g01194 Phmamm.CG.MTP2014.S30.g01195 Phmamm.CG.MTP2014.S30.g01197 Phmamm.CG.MTP2014.S30.g01198 Phmamm.CG.MTP2014.S30.g01199 Phmamm.CG.MTP2014.S30.g01200 Phmamm.CG.MTP2014.S30.g01201 Phmamm.CG.MTP2014.S30.g01202 Phmamm.CG.MTP2014.S30.g01203 Phmamm.CG.MTP2014.S30.g01204 Phmamm.CG.MTP2014.S30.g01205 Phmamm.CG.MTP2014.S30.g01206 Phmamm.CG.MTP2014.S30.g01207 Phmamm.CG.MTP2014.S30.g01208 Phmamm.CG.MTP2014.S30.g01209 Phmamm.CG.MTP2014.S30.g01210 Phmamm.CG.MTP2014.S30.g01211 Click to show this node (8_Stolidobranchia) 8_Stolidobranchia duplication node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to hide this line (2_Molgula) 2_Molgula speciation node (click to collapse) 2_Molgula (~10 My ago) Click to hide this line (Moocul) Moocul terminal node Moocul - Chr:S89938 Moocul.CG.ELv1_2.S89938.g07132 Moocul.CG.ELv1_2.S89938.g07133 Moocul.CG.ELv1_2.S89938.g07134 Moocul.CG.ELv1_2.S89938.g07135 Moocul.CG.ELv1_2.S89938.g07137 Moocul.CG.ELv1_2.S89938.g07138 Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S424575 Moocci.CG.ELv1_2.S424575.g12973 Moocci.CG.ELv1_2.S424575.g12974 Moocci.CG.ELv1_2.S424575.g12975 Moocci.CG.ELv1_2.S424575.g12976 Moocci.CG.ELv1_2.S424575.g12978 Click to show this node (8_Stolidobranchia) 8_Stolidobranchia duplication node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to hide this line (Moocul) Moocul terminal node Moocul - Chr:S103853 Moocul.CG.ELv1_2.S103853.g09724 Moocul.CG.ELv1_2.S103853.g09726 Moocul.CG.ELv1_2.S103853.g09727 Click to show this node (8_Stolidobranchia) 8_Stolidobranchia duplication node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to show this node (Moocul) Moocul duplication node (click to collapse) Click to hide this line (Moocul) Moocul terminal node Moocul - Chr:S14641 Moocul.CG.ELv1_2.S14641.g00494 Moocul.CG.ELv1_2.S14641.g00495 Click to hide this line (Moocul) Moocul terminal node Moocul - Chr:S113793 Moocul.CG.ELv1_2.S113793.g13083 Moocul.CG.ELv1_2.S113793.g13084 Moocul.CG.ELv1_2.S113793.g13086 Moocul.CG.ELv1_2.S113793.g13087 Moocul.CG.ELv1_2.S113793.g13088 Moocul.CG.ELv1_2.S113793.g13089 Click to show this node (8_Stolidobranchia) 8_Stolidobranchia duplication node (click to collapse) Click to show this node (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S161851 Moocci.CG.ELv1_2.S161851.g02977 Moocci.CG.ELv1_2.S161851.g02978 Moocci.CG.ELv1_2.S161851.g02979 Click to hide this line (8_Stolidobranchia) 8_Stolidobranchia speciation node (click to collapse) 8_Stolidobranchia (~10 My ago) Click to show this node (2_Molgula) 2_Molgula speciation node (click to collapse) Click to hide this line (Moocci) Moocci terminal node Moocci - Chr:S464597 Moocci.CG.ELv1_2.S464597.g15506 Moocci.CG.ELv1_2.S464597.g15508 Moocci.CG.ELv1_2.S464597.g15509 Moocci.CG.ELv1_2.S464597.g15510 Click to show this node (7) 7 speciation node (click to collapse) Click to hide this line (6_Halocynthia) 6_Halocynthia speciation node (click to collapse) 6_Halocynthia (~10 My ago) - block_75 Fam011813 Fam002834.A Fam006286.d.b Fam006286.d.a Fam006286.c.d Fam006286.c.c Fam007039 Fam005677 Fam005406.d Fam006521 Click to hide this line (Harore) Harore terminal node Harore - Chr:S62 Harore.CG.MTP2014.S62.g12971 Harore.CG.MTP2014.S62.g03622 Harore.CG.MTP2014.S62.g09399 Harore.CG.MTP2014.S62.g09114 Harore.CG.MTP2014.S62.g07183 Harore.CG.MTP2014.S62.g10935 Harore.CG.MTP2014.S62.g03642 Harore.CG.MTP2014.S62.g07745 Harore.CG.MTP2014.S62.g04617 Harore.CG.MTP2014.S62.g07271 Harore.CG.MTP2014.S62.g01992 Harore.CG.MTP2014.S62.g06454 Harore.CG.MTP2014.S62.g13230 Harore.CG.MTP2014.S62.g13667 Harore.CG.MTP2014.S62.g00135 Harore.CG.MTP2014.S62.g13754 Harore.CG.MTP2014.S62.g15414 Harore.CG.MTP2014.S62.g02057 Harore.CG.MTP2014.S62.g10547 Harore.CG.MTP2014.S62.g08313 Harore.CG.MTP2014.S62.g06338 Harore.CG.MTP2014.S62.g07868 Harore.CG.MTP2014.S62.g15430 Harore.CG.MTP2014.S62.g11656 Harore.CG.MTP2014.S62.g07552 Harore.CG.MTP2014.S62.g11258 Harore.CG.MTP2014.S62.g08878 Harore.CG.MTP2014.S62.g04950 Harore.CG.MTP2014.S62.g11658 Harore.CG.MTP2014.S62.g01979 Click to hide this line (Haaura) Haaura terminal node Haaura - Chr:S271 Haaura.CG.MTP2014.S271.g03875 Haaura.CG.MTP2014.S271.g03876 Haaura.CG.MTP2014.S271.g03877 Haaura.CG.MTP2014.S271.g03878 Haaura.CG.MTP2014.S271.g03879 Haaura.CG.MTP2014.S271.g03880 Haaura.CG.MTP2014.S271.g03881 Haaura.CG.MTP2014.S271.g03883 Haaura.CG.MTP2014.S271.g03884 Haaura.CG.MTP2014.S271.g03885 Haaura.CG.MTP2014.S271.g03886 Haaura.CG.MTP2014.S271.g03887 Fam006488.a Cisavi.CG.ENS81.R99.998696-999678 (ENSCSAVG00000005445) KH2012:KH.C13.86 Cisavi.CG.ENS81.R99.716142-732318 (ENSCSAVG00000005027) Cisavi.CG.ENS81.R99.823482-827103 (ENSCSAVG00000005310) Cisavi.CG.ENS81.R99.760680-769350 (ENSCSAVG00000005057) Cisavi.CG.ENS81.R99.921572-946440 (ENSCSAVG00000005326) Cisavi.CG.ENS81.R99.866264-869925 (ENSCSAVG00000005319) Cisavi.CG.ENS81.R99.878134-879415 (ENSCSAVG00000005325) Cisavi.CG.ENS81.R99.795890-800696 (ENSCSAVG00000005298) Fam009349 Fam009349 Fam009349 Cisavi.CG.ENS81.R99.972667-976859 (ENSCSAVG00000005439) KH2012:KH.C13.19 Phmamm.CG.MTP2014.S30.g01196 Fam009349.a Moocul.CG.ELv1_2.S89938.g07136 Moocci.CG.ELv1_2.S424575.g12977 Moocul.CG.ELv1_2.S103853.g09725 Moocul.CG.ELv1_2.S14641.g00493 Moocul.CG.ELv1_2.S113793.g13085 Moocci.CG.ELv1_2.S161851.g02980 Fam009349.b.b.b.b Moocci.CG.ELv1_2.S464597.g15507 Fam009349.b.b.b.b Harore.CG.MTP2014.S62.g07441 Haaura.CG.MTP2014.S271.g03882 Cisavi.CG.ENS81.R99.704185-704684 (ENSCSAVG00000005025) Cisavi.CG.ENS81.R99.969975-970590 (ENSCSAVG00000005436) Cisavi.CG.ENS81.R99.950020-968983 (ENSCSAVG00000005373) Cisavi.CG.ENS81.R99.774221-774977 (ENSCSAVG00000005083) Cisavi.CG.ENS81.R99.1014027-1015406 (ENSCSAVG00000005452) Cisavi.CG.ENS81.R99.1000360-1010442 (ENSCSAVG00000005448) Cisavi.CG.ENS81.R99.790804-796112 (ENSCSAVG00000005101) Cisavi.CG.ENS81.R99.835838-837979 (ENSCSAVG00000005317) Cisavi.CG.ENS81.R99.784762-789248 (ENSCSAVG00000005086) Cisavi.CG.ENS81.R99.744723-758382 (ENSCSAVG00000005036)