Root species for TUBB1 (GRMZM2G164696) (Zea mays) | AlignView depth | PhyloView depth | |
---|---|---|---|
Viridiplantae | ~10 Mya | 84 species | |
Embryophyta | ~10 Mya | 80 species | 1437 homologs (oldest homol. - dupl. node) 1423 homologs (dupl. node) 1411 homologs (dupl. node) 1396 homologs (dupl. node) 1379 homologs (dupl. node) 1162 homologs (dupl. node) 1122 homologs (dupl. node) 1043 homologs (dupl. node) 829 homologs (dupl. node) 817 homologs |
Tracheophyta | ~10 Mya | 78 species | 816 homologs |
Magnoliophyta | ~10 Mya | 76 species | 815 homologs (dupl. node) 810 homologs (dupl. node) 769 homologs (dupl. node) 335 homologs (dupl. node) 326 homologs (dupl. node) 213 homologs |
Mesangiospermae | ~10 Mya | 74 species | 212 homologs (dupl. node) 49 homologs |
Commelinids | ~10 Mya | 31 species | 29 homologs |
Poaceae | ~10 Mya | 29 species | 27 homologs |
Panicoideae | ~10 Mya | 5 species | 5 homologs |
Andropogoneae | ~10 Mya | 3 species | 3 homologs |
Zea mays | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'