Genomicus v16.03 Title
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DYOGEN group

web-code version: 2014-03-13
database version: 16.03


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Enter a gene name or a CNE name (Ensembl nomenclature or approved gene symbol)
You can restrict the search to one species (ancestral or modern).

Default view
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Selected examples: BRADI2G34810, PHYA, TUBB1, GRMZM2G028033.

Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.

Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and paralogous copies in all the other sequenced angiosperm genomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species within the phylogenetic range of interest.

All the data on extant species displayed in this browser are from EnsemblGenome Plant, Phytozome, and specific servers.


Summary statistics of Genomicus version 16.03: (view species tree in pdf or newick)

Number of extant species34
Number of extant genes1198993
 
Number of ancestral species16
Number of ancestral genes639286
Number of ancestral synteny blocks15318

What's new in version 16.03 ?
Warning: Arabidopsis thaliana genes often possess many alternative names in addition to the TAIR locus name. Currently such genes may only be queried using the TAIR locus name or a single alternative name, identical to the main name used in EnsemblGenome.
We apologise for the inconvenience.


Karyotype View and Matrix View

Karyotype View Matrix View


Other Genomicus Sites

Genomicus GenomicusProtists GenomicusMetazoa GenomicusFungi

Citing GenomicusPlants:
GenomicusPlants : A Web Resource to Study Genome Evolution in Flowering Plants. .
Alexandra Louis; Florent Murat; Jerome Salse; Hugues Roest Crollius Plant and Cell Physiology 2014;doi: 10.1093/pcp/pcu177

Citing Genomicus:
Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics .
Alexandra Louis; Nga Thi Thuy Nguyen; Matthieu Muffato; Hugues Roest Crollius Nucleic Acids Research 2014;doi: 10.1093/nar/gku1112

Genomicus: five genome browsers for comparative genomics in eukaryota.
Alexandra Louis; Matthieu Muffato; Hugues Roest Crollius. Nucleic Acids Research 2012; doi: 10.1093/nar/gks1156