Root species for ANIA_00774 (CADANIAG00001889) (Aspergillus nidulans FGSC A4) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi | ~10 Mya | 465 species | 782 homologs (oldest homol.) |
Dikarya | ~10 Mya | 420 species | 772 homologs (dupl. node) 767 homologs (dupl. node) 627 homologs (dupl. node) 597 homologs |
Ascomycota | ~10 Mya | 307 species | 468 homologs (dupl. node) 465 homologs (dupl. node) 122 homologs (dupl. node) 80 homologs |
saccharomyceta | ~10 Mya | 297 species | 79 homologs |
Pezizomycotina | ~10 Mya | 240 species | 78 homologs |
leotiomyceta | ~10 Mya | 231 species | 77 homologs |
Eurotiomycetes | ~10 Mya | 91 species | 71 homologs |
Eurotiomycetidae | ~10 Mya | 64 species | 70 homologs |
Eurotiales | ~10 Mya | 36 species | 39 homologs (dupl. node) 27 homologs |
Aspergillaceae | ~10 Mya | 27 species | 20 homologs (dupl. node) 10 homologs |
Aspergillus | ~10 Mya | 15 species | 9 homologs |
Aspergillus nidulans FGSC A4 | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'