Genomicus v93.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 93.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for AMHR2 (ENSG00000135409) (Human) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 187 species
Bilateria Bilateria ~580 Mya 185 species 2386 homologs (oldest homol. - dupl. node)
365 homologs
Chordata Chordata ~550 Mya 181 species 362 homologs
Vertebrata Vertebrata ~550 Mya 177 species 361 homologs (dupl. node)
160 homologs
Euteleostomi Euteleostomi ~420 Mya 173 species 159 homologs
Sarcopterygii Sarcopterygii ~400 Mya 151 species 139 homologs
Tetrapoda Tetrapoda ~359 Mya 149 species 137 homologs
Amniota Amniota ~326 Mya 147 species 135 homologs
Mammalia Mammalia ~184 Mya 133 species 127 homologs
Theria Theria ~166 Mya 131 species 126 homologs
Eutheria Eutheria ~102 Mya 125 species 121 homologs
Boreoeutheria Boreoeutheria ~95 Mya 116 species 113 homologs
Euarchontoglires Euarchontoglires ~90 Mya 87 species 85 homologs
Primates Primates ~83 Mya 42 species 42 homologs
Haplorrhini Haplorrhini ~57 Mya 36 species 36 homologs
Simiiformes Simiiformes ~45 Mya 34 species 34 homologs
Catarrhini Catarrhini ~30 Mya 27 species 27 homologs
Hominoidea Hominoidea ~25 Mya 11 species 11 homologs
Hominidae Hominidae ~16 Mya 9 species 9 homologs
Homo/Pan/Gorilla group Homo/Pan/Gorilla group ~9 Mya 7 species 7 homologs
Homo/Pan group Homo/Pan group ~5 Mya 5 species 5 homologs
Human Human ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'