Genomicus v93.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 93.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for fgf1a (ENSDARG00000017542) (Zebrafish) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 187 species
Bilateria Bilateria ~580 Mya 185 species 364 homologs (oldest homol.)
Chordata Chordata ~550 Mya 181 species 360 homologs
Vertebrata Vertebrata ~550 Mya 177 species 359 homologs
Euteleostomi Euteleostomi ~420 Mya 173 species 353 homologs (dupl. node)
191 homologs
Neopterygii Neopterygii ~330 Mya 21 species 39 homologs
Clupeocephala Clupeocephala ~300 Mya 19 species 37 homologs (dupl. node)
19 homologs
Otophysi Otophysi ~150 Mya 3 species 3 homologs
Zebrafish Zebrafish ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'