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Genomicus v92.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 92.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for AMHR2 (ENSG00000135409) (Human) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 181 species
Bilateria Bilateria ~580 Mya 179 species 2297 homologs (oldest homol. - dupl. node)
353 homologs
Chordata Chordata ~550 Mya 175 species 350 homologs
Vertebrata Vertebrata ~550 Mya 171 species 349 homologs (dupl. node)
157 homologs
Euteleostomi Euteleostomi ~420 Mya 169 species 156 homologs
Sarcopterygii Sarcopterygii ~400 Mya 147 species 136 homologs
Tetrapoda Tetrapoda ~359 Mya 145 species 134 homologs
Amniota Amniota ~326 Mya 143 species 132 homologs
Mammalia Mammalia ~184 Mya 129 species 124 homologs
Theria Theria ~166 Mya 127 species 123 homologs
Eutheria Eutheria ~102 Mya 121 species 118 homologs
Boreoeutheria Boreoeutheria ~95 Mya 112 species 110 homologs
Euarchontoglires Euarchontoglires ~90 Mya 87 species 86 homologs
Primates Primates ~83 Mya 42 species 42 homologs
Haplorrhini Haplorrhini ~57 Mya 36 species 36 homologs
Simiiformes Simiiformes ~45 Mya 34 species 34 homologs
Catarrhini Catarrhini ~30 Mya 27 species 27 homologs
Hominoidea Hominoidea ~25 Mya 11 species 11 homologs
Hominidae Hominidae ~16 Mya 9 species 9 homologs
Homo/Pan/Gorilla group Homo/Pan/Gorilla group ~9 Mya 7 species 7 homologs
Homo/Pan group Homo/Pan group ~5 Mya 5 species 5 homologs
Human Human ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'