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Genomicus v89.01 Title
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DYOGEN group

web-code version: 2014-09-19
database version: 89.01


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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for AMHR2 (ENSG00000135409) (Human) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 130 species
Bilateria Bilateria ~580 Mya 128 species 125 homologs (oldest homol.)
Olfactores Olfactores ~550 Mya 124 species 122 homologs
Craniata Craniata ~550 Mya 120 species 118 homologs
Euteleostomi Euteleostomi ~420 Mya 118 species 116 homologs
Sarcopterygii Sarcopterygii ~400 Mya 96 species 96 homologs
Tetrapoda Tetrapoda ~359 Mya 94 species 95 homologs
Amniota Amniota ~326 Mya 92 species 93 homologs
Mammalia Mammalia ~184 Mya 78 species 77 homologs
Theria Theria ~166 Mya 76 species 75 homologs
Eutheria Eutheria ~102 Mya 70 species 69 homologs
Boreoeutheria Boreoeutheria ~95 Mya 61 species 61 homologs
Euarchontoglires Euarchontoglires ~90 Mya 38 species 37 homologs
Primates Primates ~83 Mya 22 species 22 homologs
Haplorrhini Haplorrhini ~57 Mya 18 species 18 homologs
Simiiformes Simiiformes ~45 Mya 16 species 16 homologs
Catarrhini Catarrhini ~31 Mya 14 species 14 homologs
Hominoidea Hominoidea ~25 Mya 9 species 9 homologs
Hominidae Hominidae ~16 Mya 7 species 7 homologs
Homo/Pan/Gorilla group Homo/Pan/Gorilla group ~9 Mya 5 species 5 homologs
Homo/Pan group Homo/Pan group ~5 Mya 3 species 3 homologs
Human Human ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'