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Genomicus v88.01 Title
Genomicus v88.01 Logo


DYOGEN group

web-code version: 2014-09-19
database version: 88.01


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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for AMHR2 (ENSG00000135409) (Human) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 130 species
Bilateria Bilateria ~580 Mya 128 species 1666 homologs (oldest homol. - dupl. node)
246 homologs
Olfactores Olfactores ~550 Mya 124 species 243 homologs
Vertebrata Vertebrata ~550 Mya 120 species 242 homologs (dupl. node)
101 homologs
Euteleostomi Euteleostomi ~420 Mya 118 species 100 homologs
Sarcopterygii Sarcopterygii ~400 Mya 96 species 80 homologs
Tetrapoda Tetrapoda ~359 Mya 94 species 78 homologs
Amniota Amniota ~326 Mya 92 species 76 homologs
Mammalia Mammalia ~184 Mya 78 species 73 homologs
Theria Theria ~166 Mya 76 species 72 homologs
Eutheria Eutheria ~102 Mya 70 species 67 homologs
Boreoeutheria Boreoeutheria ~95 Mya 61 species 59 homologs
Euarchontoglires Euarchontoglires ~90 Mya 38 species 37 homologs
Primates Primates ~83 Mya 22 species 22 homologs
Haplorrhini Haplorrhini ~57 Mya 18 species 18 homologs
Simiiformes Simiiformes ~45 Mya 16 species 16 homologs
Catarrhini Catarrhini ~31 Mya 14 species 14 homologs
Hominoidea Hominoidea ~25 Mya 9 species 9 homologs
Hominidae Hominidae ~16 Mya 7 species 7 homologs
Homo/Pan/Gorilla group Homo/Pan/Gorilla group ~9 Mya 5 species 5 homologs
Homo/Pan group Homo/Pan group ~5 Mya 3 species 3 homologs
Human Human ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'