A more recent version of genomicus is available here

 
Genomicus v75.02 Title
Genomicus v75.02 Logo


DYOGEN group

web-code version: 2014-05-27
database version: 75.02


email logo Contact us.



IBENS Logo ENS Logo CNRS Logo ANCESTROME Logo

Enter a gene name or a CNE name (Ensembl nomenclature or approved gene symbol)
You can restrict the search to one species (ancestral or modern).

Search by gene name
Search by CNE name
Default view
Custom view
 

Selected examples: fgf1a, Phox2B, egr2, RegHsa4027615 . More details on examples can be found here

Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.

Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and paralogous copies in all the other sequenced metazoan genomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species within the phylogenetic range of interest.

All the data on extant species displayed in this browser are from Ensembl, JGI, and Genoscope.


Summary statistics of Genomicus version 75.02: (view species tree in pdf or newick)

Number of extant species66
Number of extant genes1203726
 
Number of ancestral species55
Number of ancestral genes1042200
Number of ancestral synteny blocks32297

What's new in version 75.02 ?


Karyotype View and Matrix View

Karyotype View Matrix View


Other Genomicus Sites

GenomicusProtists GenomicusPlants GenomicusMetazoa GenomicusFungi

Citing Genomicus:
Genomicus: five genome browsers for comparative genomics in eukaryota.
Alexandra Louis; Matthieu Muffato; Hugues Roest Crollius. Nucleic Acids Research 2013; 41:D700-D705. doi: 10.1093/nar/gks1156 - PubMed